Factsheet for Solyc05g014280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031252	Potato	plastid	84.16	82.3
VIT_01s0010g02290.t01	Wine grape	cytosol	53.39	64.84
GSMUA_Achr10P...	Banana	cytosol	55.2	62.89
KRG97479	Soybean	cytosol	39.37	58.0
GSMUA_Achr1P17060_001	Banana	plastid	50.23	50.68
KRH31411	Soybean	cytosol, plastid	52.49	49.36
Solyc12g042830.1.1	Tomato	plastid	14.93	41.77
TraesCS5D01G266000.1	Wheat	plastid	43.89	39.27
TraesCS5B01G257000.1	Wheat	plastid	42.53	38.21
TraesCS5A01G257700.1	Wheat	plastid	42.53	37.75
Zm00001d031325_P001	Maize	plastid	39.82	34.92
KXG25677	Sorghum	plastid	39.37	32.34
Solyc03g082420.2.1	Tomato	plastid	33.03	31.06

Protein Annotations

Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	ProteinID:AAM96945.1	EMBL:AY128100	ncoils:Coil
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF137	UniProt:Q8L470	SUPFAM:SSF49764	EnsemblPlantsGene:Solyc05g014280.2	EnsemblPlants:Solyc05g014280.2.1
UniParc:UPI00000A81D5	SEG:seg	:	:	:	:

Description

Small heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8L470]

Coordinates

chr5:-:8089580..8092146

Molecular Weight (calculated)

25729.9 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.856

Length

221 amino acids

Sequence
(BLAST)

001: MAHCLSRFPI SQPILFSNNP KYSNSSLPIS SRKYQGNYKK LKVMVVDERH NLDHLQRQNK TPQPRKRTPQ MAPVGLWDRF PTARTVQQMM DTMDRVIEDP
101: LAFNGGPSTD DIGYRRGRTP WEIKENEGEY KMRFDMPGMT KEDVKVWLEE KMLVVKGEKM VKNNEKEEEW SAKSYGKYNT RIALPENIDF EKIKAEVKDG
201: VLYITIPKAS SNPKVFDINV Q

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.