Factsheet for GSMUA_Achr9P28520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	GSMUA_Achr11P...	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042830.1.1	Tomato	plastid	15.28	44.3
KRH47454	Soybean	cytosol	17.47	43.48
Zm00001d015777_P001	Maize	mitochondrion	38.43	41.71
Bra018972.1-P	Field mustard	cytosol	34.06	40.84
CDY66886	Canola	cytosol	34.06	40.84
CDY40150	Canola	mitochondrion	39.74	39.22
EES06474	Sorghum	mitochondrion	37.12	38.99
PGSC0003DMT400073689	Potato	mitochondrion	36.68	36.68
AT1G52560.1	Thale cress	mitochondrion	36.68	36.21
VIT_09s0002g06790.t01	Wine grape	mitochondrion	36.24	35.62
KRH44453	Soybean	mitochondrion	34.93	35.56
HORVU6Hr1G038320.1	Barley	mitochondrion	23.58	34.18
Os02t0201000-02	Rice	mitochondrion	30.57	31.96
TraesCS6B01G210600.1	Wheat	mitochondrion	34.06	30.0
TraesCS6D01G169100.1	Wheat	cytosol	32.31	29.48
TraesCS6A01G181700.1	Wheat	plastid	32.31	28.03
GSMUA_Achr10P...	Banana	cytosol	17.03	20.1
GSMUA_Achr2P12540_001	Banana	plastid	20.09	19.57
GSMUA_Achr1P17060_001	Banana	plastid	17.47	18.26
GSMUA_Achr4P28560_001	Banana	plastid	17.03	16.39
CDY66885	Canola	mitochondrion	0.87	8.33

Protein Annotations

MapMan:19.1.8.9	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009644	GO:GO:0042542	EnsemblPlantsGene:GSMUA_Achr9G28520_001	EnsemblPlants:GSMUA_Achr9P28520_001	EnsemblPlants:GSMUA_Achr9T28520_001
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	UniProt:M0U4A9	PFAM:PF00011
PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	SUPFAM:SSF49764	UniParc:UPI0002968A97	SEG:seg

Description

Putative 26.5 kDa heat shock protein, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr9G28520_001]

Coordinates

chr9:-:32475582..32476345

Molecular Weight (calculated)

25319.5 Da

IEP (calculated)

5.245

GRAVY (calculated)

-0.687

Length

229 amino acids

Sequence
(BLAST)

001: MALARACLSN ALRSRSFSLL HTGGAARLRG LAAAPSFPYS SSGDAAADSS PEDRSDQVAA TRAPSPARGR RSRRLSWRNP WDLSPFHLND GFGNALLQVS
101: ENLNGLLERL SPSRLLGRLK EDDKCYKLRY EVPGLRKEDL RVTVEEGMLV ITGESEDEDA GDESSSSTTE DEGDGGWHTR RYGYINATLL LPEDAKADEI
201: RAELRDGILR IYIPRSEEKK SNAREIEIN

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.