Factsheet for VIT_09s0002g06790.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g03560.t01
VIT_05s0020g00690.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	VIT_03s0038g03560.t01	AT2G47450.1	21798944
AT1G52560.1	VIT_05s0020g00690.t01	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47454	Soybean	cytosol	26.18	66.3
Solyc12g042830.1.1	Tomato	plastid	21.03	62.03
KRH44453	Soybean	mitochondrion	49.36	51.11
Bra018972.1-P	Field mustard	cytosol	41.2	50.26
CDY66886	Canola	cytosol	41.2	50.26
CDY40150	Canola	mitochondrion	48.93	49.14
PGSC0003DMT400073689	Potato	mitochondrion	48.07	48.91
AT1G52560.1	Thale cress	mitochondrion	47.64	47.84
GSMUA_Achr9P28520_001	Banana	mitochondrion	35.62	36.24
Zm00001d015777_P001	Maize	mitochondrion	32.62	36.02
EES06474	Sorghum	mitochondrion	32.62	34.86
TraesCS6D01G169100.1	Wheat	cytosol	31.33	29.08
Os02t0201000-02	Rice	mitochondrion	27.04	28.77
VIT_01s0010g02290.t01	Wine grape	cytosol	22.32	28.57
VIT_16s0098g01060.t01	Wine grape	plastid	26.61	27.31
TraesCS6A01G181700.1	Wheat	plastid	30.47	26.89
TraesCS6B01G210600.1	Wheat	mitochondrion	29.61	26.54
HORVU6Hr1G038320.1	Barley	mitochondrion	15.45	22.78

Protein Annotations

EntrezGene:100266263	wikigene:100266263	MapMan:19.1.8.9	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CBI36318
ProteinID:CBI36318.3	UniProt:D7U122	EMBL:FN596494	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	GO:GO:0009644	GO:GO:0042542	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100266263	wikigene:LOC100266263	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF173	SUPFAM:SSF49764	UniParc:UPI00015CD0DF	ArrayExpress:VIT_09s0002g06790	EnsemblPlantsGene:VIT_09s0002g06790	EnsemblPlants:VIT_09s0002g06790.t01
RefSeq:XP_002267925	RefSeq:XP_002267925.1	RefSeq:XP_010654789.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:+:6710140..6711133

Molecular Weight (calculated)

26316.3 Da

IEP (calculated)

8.422

GRAVY (calculated)

-0.750

Length

233 amino acids

Sequence
(BLAST)

001: MALARLALRS LQQRVPSSSS SSLLSPSLSE RALTGQRWGP EIVKRFSATP DAASDKPSGE KTEVAVSEGD RKPKLFPRKQ RKRSLWRNNR NDFVPSLNEL
101: FPPSIGNALM QATQHMNRLL ENLAPSRLIG RLKEQDQCYK LRYEMPGLTK EDVKISVEDG ILSIRGEHKE EEEEGSDDEH WSATSYGYYD TSLLLPTDAK
201: IEEIKAELKD GVLTIIIPRN EKKGKDVKEV QIQ

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.