Factsheet for VIT_16s0098g01060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53604	Soybean	plastid	59.91	58.87
KRH64320	Soybean	plastid	59.03	58.01
CDY30235	Canola	plastid	56.83	57.59
CDY55343	Canola	plastid	56.83	57.59
AT4G27670.1	Thale cress	plastid	56.83	56.83
CDY19036	Canola	plastid	55.95	56.7
Bra026317.1-P	Field mustard	plastid	55.51	56.25
PGSC0003DMT400008351	Potato	plastid	57.27	55.79
Solyc03g082420.2.1	Tomato	plastid	57.71	55.74
EER95179	Sorghum	plastid	50.66	47.13
TraesCS4D01G226000.1	Wheat	mitochondrion	49.34	47.06
TraesCS4A01G068200.1	Wheat	mitochondrion	48.9	46.64
Zm00001d028408_P001	Maize	plastid	47.58	45.0
GSMUA_Achr2P12540_001	Banana	plastid	45.81	44.26
TraesCS4B01G225400.1	Wheat	plastid	47.14	44.03
TraesCS4A01G068300.1	Wheat	plastid	46.26	43.93
Os03t0245800-02	Rice	plastid	46.26	43.75
GSMUA_Achr4P28560_001	Banana	plastid	38.77	36.97
HORVU4Hr1G063350.1	Barley	mitochondrion	48.46	36.18
VIT_01s0010g02290.t01	Wine grape	cytosol	28.19	35.16
VIT_09s0002g06790.t01	Wine grape	mitochondrion	27.31	26.61
Os03t0835700-00	Rice	plastid	20.26	24.73

Protein Annotations

EntrezGene:100267630	wikigene:100267630	MapMan:19.1.8.11	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	ProteinID:CBI23075
ProteinID:CBI23075.3	UniProt:E0CVB4	EMBL:FN595247	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EntrezGene:LOC100267630	wikigene:LOC100267630	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF167	SUPFAM:SSF49764	TIGR:TC62350	UniParc:UPI00015CB573	ArrayExpress:VIT_16s0098g01060	EnsemblPlantsGene:VIT_16s0098g01060
EnsemblPlants:VIT_16s0098g01060.t01	unigene:Vvi.4530	RefSeq:XP_002272418	RefSeq:XP_002272418.1	SEG:seg	:

Description

No Description!

Coordinates

chr16:-:21339160..21340093

Molecular Weight (calculated)

25030.9 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.505

Length

227 amino acids

Sequence
(BLAST)

001: MASLKAFPFS SSPLATHKPS LSKGVAGAPC SAFFPSSRHG GRSRLALVRA EATGENKDAS LDVQVHQGNK GATAVERQPR RLALDISPFG LLDPFSPMRT
101: MRQMMDAMDR MFEETVAFPG SAEVRSPWDI VDDENEIKMR FDMPGLSKED VKVSVEDDLL VIKGEQKKEE GEKDSWSGSG FSSYSTRLQL PDNCEKDKIK
201: AELKNGVLSI SIPKTKVERK VIDVQIQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.