CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53604	Soybean	plastid	90.91	90.91
CDY55343	Canola	plastid	57.58	59.38
VIT_16s0098g01060.t01	Wine grape	plastid	58.01	59.03
Bra026317.1-P	Field mustard	plastid	57.14	58.93
CDY30235	Canola	plastid	57.14	58.93
CDY19036	Canola	plastid	56.71	58.48
PGSC0003DMT400008351	Potato	plastid	58.87	58.37
Solyc03g082420.2.1	Tomato	plastid	59.31	58.3
AT4G27670.1	Thale cress	plastid	54.55	55.51
EER95179	Sorghum	plastid	51.52	48.77
TraesCS4D01G226000.1	Wheat	mitochondrion	47.62	46.22
GSMUA_Achr2P12540_001	Banana	plastid	46.75	45.96
Zm00001d028408_P001	Maize	plastid	47.62	45.83
Os03t0245800-02	Rice	plastid	47.62	45.83
TraesCS4A01G068200.1	Wheat	mitochondrion	47.19	45.8
KRH47454	Soybean	cytosol	17.75	44.57
TraesCS4A01G068300.1	Wheat	plastid	45.89	44.35
TraesCS4B01G225400.1	Wheat	plastid	46.32	44.03
KRG97479	Soybean	cytosol	25.54	39.33
GSMUA_Achr4P28560_001	Banana	plastid	39.39	38.24
HORVU4Hr1G063350.1	Barley	mitochondrion	48.05	36.51
KRH46215	Soybean	plastid	29.87	30.53
KRH31411	Soybean	cytosol, plastid	30.3	29.79
KRG98734	Soybean	plastid	29.0	29.13
KRH44453	Soybean	mitochondrion	25.54	26.22
Os03t0835700-00	Rice	plastid	18.18	22.58

Protein Annotations

MapMan:19.1.8.11	Gene3D:2.60.40.790	EntrezGene:548078	InterPro:A-crystallin/Hsp20_dom	EMBL:ACUP02002753	EnsemblPlantsGene:GLYMA_04G229800
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
InterPro:HSP20	InterPro:HSP20-like_chaperone	UniProt:I1JYK1	InterPro:IPR002068	InterPro:IPR008978	EnsemblPlants:KRH64320
ProteinID:KRH64320	ProteinID:KRH64320.1	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF167
SUPFAM:SSF49764	UniParc:UPI0002339DB0	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:49871550..49873562

Molecular Weight (calculated)

25988.0 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.685

Length

231 amino acids

Sequence
(BLAST)

001: MAQALSTSSL LLSQKTGSYV KPQNNVIVAC MASFPSRKEF PRLGRVRAQA SGDNKDNSVE VQHVSKGDQG TAVEKKPRRT AMDISPFGIL DPWSPMRSMR
101: QILDTMDRVF EDTMTFPGRN IGGGEIRAPW DIKDEEHEIR MRFDMPGLAK EDVKVSVEDD MLVIKGGHKS EQEHGGDDSW SSRTYSSYDT RLKLPDNCEK
201: DKVKAELKNG VLYITIPKTK VERKVIDVQV Q

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.