Factsheet for PGSC0003DMT400008351

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g082420.2.1	Tomato	plastid	78.11	77.45
KRH64320	Soybean	plastid	58.37	58.87
AT4G27670.1	Thale cress	plastid	55.79	57.27
VIT_16s0098g01060.t01	Wine grape	plastid	55.79	57.27
KRH53604	Soybean	plastid	56.65	57.14
CDY30235	Canola	plastid	51.5	53.57
CDY55343	Canola	plastid	51.5	53.57
Bra026317.1-P	Field mustard	plastid	51.07	53.12
CDY19036	Canola	plastid	51.07	53.12
GSMUA_Achr2P12540_001	Banana	plastid	49.36	48.94
TraesCS4D01G226000.1	Wheat	mitochondrion	49.79	48.74
TraesCS4A01G068200.1	Wheat	mitochondrion	48.93	47.9
TraesCS4A01G068300.1	Wheat	plastid	48.93	47.7
EER95179	Sorghum	plastid	49.79	47.54
TraesCS4B01G225400.1	Wheat	plastid	48.93	46.91
Zm00001d028408_P001	Maize	plastid	47.64	46.25
Os03t0245800-02	Rice	plastid	47.21	45.83
GSMUA_Achr4P28560_001	Banana	plastid	39.06	38.24
HORVU4Hr1G063350.1	Barley	mitochondrion	48.5	37.17
PGSC0003DMT400031252	Potato	plastid	31.76	32.74
PGSC0003DMT400073689	Potato	mitochondrion	23.61	24.02
Os03t0835700-00	Rice	plastid	18.45	23.12

Protein Annotations

EntrezGene:102584503	MapMan:19.1.8.11	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	GO:GO:0000427	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009408	GO:GO:0009416	GO:GO:0009536	GO:GO:0009628	GO:GO:0009644	GO:GO:0009658
GO:GO:0009987	GO:GO:0016043	GO:GO:0042542	GO:GO:0042644	GO:GO:0043621	GO:GO:0101031
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	UniProt:M0ZUG1	PFAM:PF00011
EnsemblPlantsGene:PGSC0003DMG400003219	PGSC:PGSC0003DMG400003219	EnsemblPlants:PGSC0003DMT400008351	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF167
SUPFAM:SSF49764	UniParc:UPI000296D7DC	RefSeq:XP_006347502.1	SEG:seg	:	:

Description

Small heat shock protein, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400003219]

Coordinates

chr3:-:47576728..47579687

Molecular Weight (calculated)

25852.7 Da

IEP (calculated)

7.630

GRAVY (calculated)

-0.588

Length

233 amino acids

Sequence
(BLAST)

001: MACTILASSP LASNVSVGGT SRINKNVAAP CSVFIPSMRR RTTRLVAQAT GDNKDTSVDV HHSSAQGGNN QGTAVERRPT RMAFDVSPFG VLDPMSPMRT
101: MRQMIDTMDR LFEDTMTFPG RNRASGAGEI RTPWDIHDDE NEIKMRFDMP GLSKEDVKVS VENDVLVIKG EHKKEEGGKD EHSWGRNYSS YDTRLSLPDN
201: VEKDKIKAEL KNGVLFISIP KTKVEKVVDV QIN

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.