Factsheet for TraesCS4D01G226000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G068200.1	Wheat	mitochondrion	89.08	89.08
TraesCS4B01G225400.1	Wheat	plastid	86.55	84.77
EER95179	Sorghum	plastid	78.15	76.23
Zm00001d028408_P001	Maize	plastid	73.53	72.92
Os03t0245800-02	Rice	plastid	69.75	69.17
HORVU4Hr1G063350.1	Barley	mitochondrion	85.29	66.78
PGSC0003DMT400008351	Potato	plastid	48.74	49.79
VIT_16s0098g01060.t01	Wine grape	plastid	47.06	49.34
KRH64320	Soybean	plastid	46.22	47.62
Solyc03g082420.2.1	Tomato	plastid	46.64	47.23
KRH53604	Soybean	plastid	45.8	47.19
GSMUA_Achr2P12540_001	Banana	plastid	46.22	46.81
AT4G27670.1	Thale cress	plastid	44.12	46.26
CDY55343	Canola	plastid	43.28	45.98
CDY30235	Canola	plastid	43.28	45.98
CDY19036	Canola	plastid	42.86	45.54
Bra026317.1-P	Field mustard	plastid	42.44	45.09
GSMUA_Achr4P28560_001	Banana	plastid	39.92	39.92
Os03t0835700-00	Rice	plastid	21.85	27.96
TraesCS6D01G169100.1	Wheat	cytosol	27.31	25.9
TraesCS5D01G266000.1	Wheat	plastid	25.21	24.29

Protein Annotations

MapMan:19.1.8.11	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	GO:GO:0000427	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006355	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408
GO:GO:0009416	GO:GO:0009536	GO:GO:0009628	GO:GO:0009644	GO:GO:0009658	GO:GO:0009987
GO:GO:0016043	GO:GO:0042542	GO:GO:0042644	GO:GO:0043621	GO:GO:0101031	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF167	SUPFAM:SSF49764	EnsemblPlantsGene:TraesCS4D01G226000	EnsemblPlants:TraesCS4D01G226000.1	TIGR:cd06464	SEG:seg

Description

No Description!

Coordinates

chr4D:-:384975222..384976356

Molecular Weight (calculated)

26500.7 Da

IEP (calculated)

10.010

GRAVY (calculated)

-0.599

Length

238 amino acids

Sequence
(BLAST)

001: MAAANAPFAL SRLSPAARLP IRAWRAARPA PVWTGRTRPL SVASAAQENR DNSVDVQVSQ AQNGGNQQGN AVQRRPRRAG FDISPFGLVD PMSPMRTMRQ
101: MLDTMDRLFD DAVGFPTARR SPAAASEMPR MPWDIMEDDK EVKMRFDMPG LSRKEVKVMV EGDALVIRGE HKKEAGEGQV EGGDGWWKER SVSSYDMRLA
201: LPDECDKSQV RAELKNGVLL VSVPKRETER KVIDVQVQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.