CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64320	Soybean	plastid	90.91	90.91
VIT_16s0098g01060.t01	Wine grape	plastid	58.87	59.91
Bra026317.1-P	Field mustard	plastid	57.58	59.38
CDY55343	Canola	plastid	57.58	59.38
CDY30235	Canola	plastid	57.14	58.93
CDY19036	Canola	plastid	56.71	58.48
AT4G27670.1	Thale cress	plastid	55.84	56.83
PGSC0003DMT400008351	Potato	plastid	57.14	56.65
Solyc03g082420.2.1	Tomato	plastid	57.58	56.6
EER95179	Sorghum	plastid	50.65	47.95
KRH47454	Soybean	cytosol	19.05	47.83
Os03t0245800-02	Rice	plastid	49.35	47.5
GSMUA_Achr2P12540_001	Banana	plastid	47.19	46.38
TraesCS4D01G226000.1	Wheat	mitochondrion	47.19	45.8
Zm00001d028408_P001	Maize	plastid	47.19	45.42
TraesCS4A01G068200.1	Wheat	mitochondrion	46.75	45.38
TraesCS4A01G068300.1	Wheat	plastid	45.89	44.35
TraesCS4B01G225400.1	Wheat	plastid	46.32	44.03
KRG97479	Soybean	cytosol	25.97	40.0
GSMUA_Achr4P28560_001	Banana	plastid	38.96	37.82
HORVU4Hr1G063350.1	Barley	mitochondrion	46.75	35.53
KRH46215	Soybean	plastid	30.3	30.97
KRH31411	Soybean	cytosol, plastid	31.17	30.64
KRG98734	Soybean	plastid	29.44	29.57
KRH44453	Soybean	mitochondrion	27.27	28.0
Os03t0835700-00	Rice	plastid	17.32	21.51

Protein Annotations

EntrezGene:100798019	MapMan:19.1.8.11	MapMan:19.1.8.9	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	EMBL:ACUP02003478
EnsemblPlantsGene:GLYMA_06G134900	InterPro:HSP20	InterPro:HSP20-like_chaperone	UniProt:I1KAZ9	InterPro:IPR002068	InterPro:IPR008978
EnsemblPlants:KRH53604	ProteinID:KRH53604	ProteinID:KRH53604.1	ProteinID:KRH53605.1	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF167	SUPFAM:SSF49764	UniParc:UPI0002339E65	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:11083518..11088668

Molecular Weight (calculated)

26061.0 Da

IEP (calculated)

7.625

GRAVY (calculated)

-0.705

Length

231 amino acids

Sequence
(BLAST)

001: MAQALSTSLA LLSQKTGYSV NPQNNAIAPC MASFPSRKEF PRLVRVRAQA SGDNKDNSVE VQHVNKGDHG TAVEKKPRRT SMDISPFGLL DPWSPMRSMR
101: QILDTMDRIF EDTMTFPGRN VGAGEIRAPW DIKDEEHEIR MRFDMPGLAK EDVKVSVEDD VLVIKGGHKS EQEHSGDDSW SSRSYNSYDT RLKLPDNCEK
201: DKIKAELKNG VLYITIPKTK VERKVIDVQV Q

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.