Factsheet for PGSC0003DMT400073689

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003274
PGSC0003DMT400011734
PGSC0003DMT400022191

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	PGSC0003DMT400003274	AT2G47450.1	21798944
AT1G52560.1	PGSC0003DMT400011734	AT3G06430.1	21798944
AT1G52560.1	PGSC0003DMT400022191	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g042830.1.1	Tomato	plastid	29.26	84.81
KRH47454	Soybean	cytosol	24.89	61.96
Bra018972.1-P	Field mustard	cytosol	43.23	51.83
KRH44453	Soybean	mitochondrion	49.78	50.67
VIT_09s0002g06790.t01	Wine grape	mitochondrion	48.91	48.07
AT1G52560.1	Thale cress	mitochondrion	46.29	45.69
GSMUA_Achr9P28520_001	Banana	mitochondrion	36.68	36.68
Zm00001d015777_P001	Maize	mitochondrion	30.13	32.7
EES06474	Sorghum	mitochondrion	31.0	32.57
TraesCS6D01G169100.1	Wheat	cytosol	29.69	27.09
TraesCS6B01G210600.1	Wheat	mitochondrion	28.82	25.38
TraesCS6A01G181700.1	Wheat	plastid	28.82	25.0
PGSC0003DMT400031252	Potato	plastid	24.02	24.34
Os02t0201000-02	Rice	mitochondrion	22.71	23.74
PGSC0003DMT400008351	Potato	plastid	24.02	23.61
HORVU6Hr1G038320.1	Barley	mitochondrion	13.54	19.62
CDY66885	Canola	mitochondrion	0.44	4.17

Protein Annotations

EntrezGene:102578969	MapMan:19.1.8.9	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	GO:GO:0006950	GO:GO:0008150
GO:GO:0009408	GO:GO:0009628	GO:GO:0009644	GO:GO:0042542	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	UniProt:M1CSH0	PFAM:PF00011	EnsemblPlantsGene:PGSC0003DMG400028624	PGSC:PGSC0003DMG400028624
EnsemblPlants:PGSC0003DMT400073689	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	SUPFAM:SSF49764	UniParc:UPI000296CF83
RefSeq:XP_006346594.1	SEG:seg	:	:	:	:

Description

Small heat-shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028624]

Coordinates

chr12:-:49808899..49810200

Molecular Weight (calculated)

26193.0 Da

IEP (calculated)

8.884

GRAVY (calculated)

-0.875

Length

229 amino acids

Sequence
(BLAST)

001: MSLARLALKS NPSVRHLNNN IQKQRWCSEL VRRFSTESEK EQVADLAGNG KSEKQQVAVS DSAKKSKLFP RRRRRGNLWT RNEPHFAPAL FENLPTGLGN
101: ALLQATENIN KIFDNLNLNP SQLLGRYKED DKNYKIRYDV PGLGKNDVKI MVEDGILTIK GEHKEEKEEE GSDDEFWSSR SYGYYNNSIV LPEDAKVDEI
201: KAEMKDGVLT ITIPKSEKPK KEVKEIEVM

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.