Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 6
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
29575040
|
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d018693_P001 | |
| Zm00001d027518_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52560.1 | Zm00001d027518_P001 | AT2G47450.1 | 21798944 |
| AT1G52560.1 | Zm00001d018693_P001 | AT3G06430.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES06474 | Sorghum | mitochondrion | 79.62 | 77.06 |
| TraesCS6D01G169100.1 | Wheat | cytosol | 61.14 | 51.39 |
| HORVU6Hr1G038320.1 | Barley | mitochondrion | 37.91 | 50.63 |
| TraesCS6B01G210600.1 | Wheat | mitochondrion | 61.61 | 50.0 |
| TraesCS6A01G181700.1 | Wheat | plastid | 62.56 | 50.0 |
| KRH47454 | Soybean | cytosol | 21.8 | 50.0 |
| Solyc12g042830.1.1 | Tomato | plastid | 16.59 | 44.3 |
| Os02t0201000-02 | Rice | mitochondrion | 45.5 | 43.84 |
| GSMUA_Achr9P28520_001 | Banana | mitochondrion | 41.71 | 38.43 |
| Bra018972.1-P | Field mustard | cytosol | 33.65 | 37.17 |
| CDY66886 | Canola | cytosol | 33.65 | 37.17 |
| KRH44453 | Soybean | mitochondrion | 37.44 | 35.11 |
| CDY40150 | Canola | mitochondrion | 37.44 | 34.05 |
| VIT_09s0002g06790.t01 | Wine grape | mitochondrion | 36.02 | 32.62 |
| AT1G52560.1 | Thale cress | mitochondrion | 35.55 | 32.33 |
| PGSC0003DMT400073689 | Potato | mitochondrion | 32.7 | 30.13 |
| Zm00001d028408_P001 | Maize | plastid | 28.44 | 25.0 |
| Zm00001d031325_P001 | Maize | plastid | 27.49 | 23.02 |
| CDY66885 | Canola | mitochondrion | 1.9 | 16.67 |
Protein Annotations
| EntrezGene:100283886 | Gene3D:2.60.40.790 | MapMan:35.1 | InterPro:A-crystallin/Hsp20_dom | ProteinID:AQK69523.1 | UniProt:B6TMR8 |
| EMBL:EU966283 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009644 |
| GO:GO:0042542 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PFAM:PF00011 |
| PFscan:PS01031 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF173 | SUPFAM:SSF49764 | UniParc:UPI000182D7A5 | EnsemblPlantsGene:Zm00001d015777 |
| EnsemblPlants:Zm00001d015777_P001 | EnsemblPlants:Zm00001d015777_T001 | SEG:seg | : | : | : |
Description
Chloroplast small heat shock protein
Coordinates
chr5:+:118463714..118464650
Molecular Weight (calculated)
22819.9 Da
IEP (calculated)
7.613
GRAVY (calculated)
-0.389
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MALARLCLNR AIAGRAQALA RPALAAAPAT DPKLHSLLST SAADSAASGE ANRRDVAVSE RSAPNRRWAW RDLRDFTPFS LVDGLGSALS QVAETLGRPL
101: ERLAPSRLLS GKVREDEARY RLRFEVPGLG KGDVRVAVED GVLVIEGEKR EHGEEGDGGE WWSTSGYHAS LLLPDDARAE GITAEVKDGV LYVTVPRTGE
201: RKRNVTEVKV Q
101: ERLAPSRLLS GKVREDEARY RLRFEVPGLG KGDVRVAVED GVLVIEGEKR EHGEEGDGGE WWSTSGYHAS LLLPDDARAE GITAEVKDGV LYVTVPRTGE
201: RKRNVTEVKV Q
001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE
Arabidopsis Description
HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.