Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G52560.1 | CDX77337 | AT2G47450.1 | 21798944 |
| AT1G52560.1 | CDY70592 | AT2G47450.1 | 21798944 |
| AT1G52560.1 | CDY05264 | AT3G06430.1 | 21798944 |
| AT1G52560.1 | CDY24692 | AT3G06430.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018972.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY40150 | Canola | mitochondrion | 96.86 | 79.74 |
| AT1G52560.1 | Thale cress | mitochondrion | 81.68 | 67.24 |
| KRH47454 | Soybean | cytosol | 30.89 | 64.13 |
| KRH44453 | Soybean | mitochondrion | 51.83 | 44.0 |
| VIT_09s0002g06790.t01 | Wine grape | mitochondrion | 50.26 | 41.2 |
| GSMUA_Achr9P28520_001 | Banana | mitochondrion | 40.84 | 34.06 |
| Zm00001d015777_P001 | Maize | mitochondrion | 37.17 | 33.65 |
| EES06474 | Sorghum | mitochondrion | 36.65 | 32.11 |
| TraesCS6D01G169100.1 | Wheat | cytosol | 37.17 | 28.29 |
| TraesCS6B01G210600.1 | Wheat | mitochondrion | 36.65 | 26.92 |
| TraesCS6A01G181700.1 | Wheat | plastid | 36.65 | 26.52 |
| Os02t0201000-02 | Rice | mitochondrion | 28.27 | 24.66 |
| CDY19036 | Canola | plastid | 28.8 | 24.55 |
| CDY55343 | Canola | plastid | 28.27 | 24.11 |
| CDY30235 | Canola | plastid | 28.27 | 24.11 |
| HORVU6Hr1G038320.1 | Barley | mitochondrion | 19.37 | 23.42 |
| CDY66885 | Canola | mitochondrion | 0.52 | 4.17 |
Protein Annotations
| EnsemblPlants:CDY66886 | EnsemblPlantsGene:GSBRNA2T00056783001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 | InterPro:HSP20-like_chaperone |
| InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF173 | PFAM:PF00011 | PFscan:PS01031 |
| ProteinID:CDY66886 | ProteinID:CDY66886.1 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI000253E89F | UniProt:A0A078JMA8 |
| MapMan:19.1.8.9 | : | : | : | : | : |
Description
BnaA06g37470DBnaA06g37470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JMA8]
Coordinates
chrLK035553:+:955..1991
Molecular Weight (calculated)
21807.6 Da
IEP (calculated)
5.046
GRAVY (calculated)
-0.904
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSGEQEE KKSTEVSVSE KKSPRRIFPR RRGRKSLWRN TDDHDYFAPA LNGIFPPSLG NALMQATENI NRIFDSFDIR PSQLMGQVKQ QDDCYKLRYE
101: VPGLTKDDVK ITVDNGILMI KGEHKAEEEE GSPEEDEHWS SRSYGYYNTS LSLPDDAKVE EIKAELKNGV LNVVIPRMEK PKKDVQEISV E
101: VPGLTKDDVK ITVDNGILMI KGEHKAEEEE GSPEEDEHWS SRSYGYYNTS LSLPDDAKVE EIKAELKNGV LNVVIPRMEK PKKDVQEISV E
001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE
Arabidopsis Description
HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.