Factsheet for VIT_03s0038g03560.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0025g01650.t01
VIT_03s0038g03560.t01
VIT_06s0004g04460.t01
VIT_08s0007g03160.t01
VIT_09s0002g07290.t01
VIT_11s0065g00940.t01
VIT_15s0048g02080.t01
VIT_18s0072g01000.t01
VIT_19s0015g01810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47450.1	VIT_09s0002g07290.t01	AT1G15310.1	20828566
AT2G47450.1	VIT_18s0072g01000.t01	AT1G34430.1	21798944
AT2G47450.1	VIT_11s0065g00940.t01	AT2G18710.1	14517205
AT2G47450.1	VIT_06s0004g04460.t01	AT2G28800.1	14517205
AT2G47450.1	VIT_06s0004g04460.t01	AT2G28800.1	20828566
AT2G47450.1	VIT_15s0048g02080.t01	AT2G45770.1	14517205
AT2G47450.1	VIT_15s0048g02080.t01	AT2G45770.1	20828566
AT2G47450.1	VIT_03s0038g03560.t01	AT2G47450.1	10480939
AT2G47450.1	VIT_03s0038g03560.t01	AT2G47450.1	11306572
AT2G47450.1	VIT_02s0025g01650.t01	AT4G10930.1	21798944
AT2G47450.1	VIT_08s0007g03160.t01	AT5G03940.1	10480939
AT2G47450.1	VIT_08s0007g03160.t01	AT5G03940.1	11306572
AT2G47450.1	VIT_08s0007g03160.t01	AT5G03940.1	14517205
AT2G47450.1	VIT_08s0007g03160.t01	AT5G03940.1	15292240
AT2G47450.1	VIT_08s0007g03160.t01	AT5G03940.1	15632183
AT2G47450.1	VIT_08s0007g03160.t01	AT5G03940.1	16678173
AT2G47450.1	VIT_19s0015g01810.t01	AT5G56250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g087400.1.1	Tomato	cytosol, mitochondrion	65.95	66.85
KRG92072	Soybean	cytosol	19.03	65.14
PGSC0003DMT400003274	Potato	plastid	64.88	65.05
KRH29099	Soybean	plastid	60.86	59.42
AT2G47450.1	Thale cress	plastid	56.57	56.57
Bra014106.1-P	Field mustard	plastid	56.84	55.79
CDX77337	Canola	plastid	56.57	55.53
CDY70592	Canola	plastid	56.3	55.26
OQU93303	Sorghum	mitochondrion, plastid	50.67	49.61
Zm00001d027518_P001	Maize	plastid	49.87	48.69
Os03t0131900-01	Rice	plastid	49.33	47.42
TraesCS4D01G323400.1	Wheat	plastid	48.26	45.92
TraesCS5A01G498700.1	Wheat	mitochondrion	47.99	45.78
TraesCS4B01G326700.1	Wheat	plastid	47.99	45.55

Protein Annotations

Gene3D:1.25.40.20	EntrezGene:100243569	wikigene:100243569	Gene3D:2.40.50.40	MapMan:23.1.7.3.1	EMBL:AM486135
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	ProteinID:CAN73168	ProteinID:CAN73168.1	ProteinID:CCB60552
ProteinID:CCB60552.1	InterPro:CPSRP43	InterPro:Chromo-like_dom_sf	InterPro:Chromo/chromo_shadow_dom	InterPro:Chromo_domain	UniProt:F6I0T6
EMBL:FN596508	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009416	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0045038	GO:GO:0080085	InterPro:IPR000953	InterPro:IPR002110
InterPro:IPR020683	InterPro:IPR036770	EntrezGene:LOC100243569	wikigene:LOC100243569	PFAM:PF00385	PFAM:PF13857
PFscan:PS50013	PFscan:PS50088	PFscan:PS50297	PANTHER:PTHR24128	PANTHER:PTHR24128:SF11	SMART:SM00248
SMART:SM00298	SUPFAM:SSF48403	SUPFAM:SSF54160	UniParc:UPI0001982EFD	ArrayExpress:VIT_03s0038g03560	EnsemblPlantsGene:VIT_03s0038g03560
EnsemblPlants:VIT_03s0038g03560.t01	unigene:Vvi.20643	RefSeq:XP_002282206	RefSeq:XP_002282206.1	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:2574666..2576021

Molecular Weight (calculated)

40917.0 Da

IEP (calculated)

4.324

GRAVY (calculated)

-0.428

Length

373 amino acids

Sequence
(BLAST)

001: MDALFVNTSL SRLKLSPKPT SLSPLPSLPL HSLHLRPARR FNLTVSQKQF EETEEVLKDE VFDSYNEDES YGEVNKIIGS RAAEGGKGME YLIEWKDGHV
101: PTWVPARYVA GDVVAEYESP WWTAAKKADD AALKALLESG DGRDVDAVDE NGRTALLFAA GLGSEACVQI LADAGADLNH RDNGGGGLTA LHMAAGYVKP
201: GVARLLIQLG ADPEAEDDRG RTPLDLAREM LRATPKGNPM QFARRLGLEN VVRVLEEAIF EYAEVQEIME RRGKGQNLEY LVKWKDGSDN EWVKAGLIAE
301: ELVRDFEAGL EYAVAQGVMG KRTGDDGNME YLVKWTDIDE ATWEPEENVD PDLIKAFEEN GAADLGAHVE GGS

Best Arabidopsis Sequence Match ( AT2G47450.1 )
(BLAST)

001: MQKVFLAMDT CALVIHQSLS RIKLSPPKSS SSSSSAFSPE SLPIRRIELC FRGAICAAVQ RNYEETTSSV EEAEEDDESS SSYGEVNKII GSRTAGEGAM
101: EYLIEWKDGH SPSWVPSSYI AADVVSEYET PWWTAARKAD EQALSQLLED RDVDAVDENG RTALLFVAGL GSDKCVRLLA EAGADLDHRD MRGGLTALHM
201: AAGYVRPEVV EALVELGADI EVEDERGLTA LELAREILKT TPKGNPMQFG RRIGLEKVIN VLEGQVFEYA EVDEIVEKRG KGKDVEYLVR WKDGGDCEWV
301: KGVHVAEDVA KDYEDGLEYA VAESVIGKRV GDDGKTIEYL VKWTDMSDAT WEPQDNVDST LVLLYQQQQP MNE

Arabidopsis Description

CAOSignal recognition particle 43 kDa protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22265]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.