Factsheet for VIT_11s0065g00940.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g03510.t01
VIT_06s0004g04460.t01
VIT_11s0065g00940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	VIT_11s0065g00940.t01	AT2G18710.1	15988575
AT2G18710.1	VIT_06s0004g04460.t01	AT2G28800.1	12217076
AT2G18710.1	VIT_06s0004g04460.t01	AT2G28800.1	15988575
AT2G18710.1	VIT_05s0020g03510.t01	AT4G14870.1	10207046
AT2G18710.1	VIT_05s0020g03510.t01	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63143	Soybean	endoplasmic reticulum	27.84	84.92
Solyc07g006520.2.1	Tomato	plastid	78.57	80.04
PGSC0003DMT400070672	Potato	plastid	77.84	79.0
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	30.04	77.73
KRH54991	Soybean	plastid	76.74	77.59
GSMUA_Achr4P12710_001	Banana	plastid	79.12	77.56
AT2G18710.1	Thale cress	plastid	76.37	75.68
CDY49314	Canola	plastid	75.82	75.14
Bra038815.1-P	Field mustard	plastid	75.64	74.95
CDY13013	Canola	plastid	75.46	74.91
EES14786	Sorghum	plastid	74.73	73.91
Os08t0254500-02	Rice	plastid	74.91	73.56
TraesCS5B01G157500.1	Wheat	plastid	72.16	71.9
TraesCS5D01G164800.1	Wheat	plastid	72.16	71.9
Zm00001d000350_P001	Maize	plastid	47.62	67.71
HORVU5Hr1G049980.4	Barley	plastid	71.43	66.33
TraesCS5A01G159800.1	Wheat	cytosol	71.79	65.33
VIT_07s0104g00040.t01	Wine grape	cytosol	21.61	19.25

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:100248517	wikigene:100248517	MapMan:23.1.5.2	ProteinID:CCB48947	ProteinID:CCB48947.1
UniProt:F6H9M6	EMBL:FN595502	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	EntrezGene:LOC100248517	wikigene:LOC100248517	HAMAP:MF_01465
PFAM:PF00344	PRINTS:PR00303	ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9
SUPFAM:SSF103491	InterPro:SecY	InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGR:TC61875
TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI0002108746	ArrayExpress:VIT_11s0065g00940	EnsemblPlantsGene:VIT_11s0065g00940	EnsemblPlants:VIT_11s0065g00940.t01
unigene:Vvi.2669	RefSeq:XP_002262945	RefSeq:XP_002262945.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:14929249..14964895

Molecular Weight (calculated)

58774.4 Da

IEP (calculated)

10.040

GRAVY (calculated)

0.259

Length

546 amino acids

Sequence
(BLAST)

001: MMITVREASS SALCFNLNLS RSSHPASTAS PRLRNSVSRA SFAVHTKPNS TPNSWNLALF CNSCKGPVFD PLGIDSDKSL GLNATWESAL GLLSQTFGST
101: SSTKKDKSAS GQGVAAAIED SSIDFGDFFK GPLPGKFLKL LGLLALSRLG VYVPLGGVNR EAFVGNLDQN SLLTTLDSFS GGGIGRLGIC SLGIVPFINA
201: QIVFQLLTQI YPKLQDLQKR EGETGRKKVL QYTRYASVGF ALVQAIGQVL FLRPYVNDFS TQWVLSSVTL LTLGSVLTTY IGERISDLKL GNGTSLLIFT
301: SIISYLPASF GRTVAQAFQD GNYIGLVIII ISFFLLVLGI VYVQEAERKI PLNYASRYTN RTGGLQKSAY LPFKVNSSGV MPIIFSTSSL ALPGTVSRFT
401: GLAALKKAAL ALNPGGSLYL PTNILLIAFF NYYYTFLQLD PDDVSEQLKR QGASIPLVRP GKSTAAFIKM VLSRISVLGS GFLAILAAGP SLVEQTTHLT
501: AFRGFAGTSV LILVGCATDT ARKVQAEIIS QKYKNIEFYD IDRLGR

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.