Factsheet for PGSC0003DMT400070672

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001063
PGSC0003DMT400070672
PGSC0003DMT400082126

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	PGSC0003DMT400070672	AT2G18710.1	15988575
AT2G18710.1	PGSC0003DMT400001063	AT2G28800.1	12217076
AT2G18710.1	PGSC0003DMT400001063	AT2G28800.1	15988575
AT2G18710.1	PGSC0003DMT400082126	AT4G14870.1	10207046
AT2G18710.1	PGSC0003DMT400082126	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006520.2.1	Tomato	plastid	97.21	97.57
KRH63143	Soybean	endoplasmic reticulum	27.7	83.24
VIT_11s0065g00940.t01	Wine grape	plastid	79.0	77.84
KRH54991	Soybean	plastid	77.14	76.85
AT2G18710.1	Thale cress	plastid	78.07	76.22
Bra038815.1-P	Field mustard	plastid	77.14	75.32
CDY49314	Canola	plastid	77.14	75.32
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	29.37	74.88
CDY13013	Canola	plastid	76.39	74.73
GSMUA_Achr4P12710_001	Banana	plastid	75.65	73.07
Os08t0254500-02	Rice	plastid	74.35	71.94
EES14786	Sorghum	plastid	73.23	71.38
TraesCS5B01G157500.1	Wheat	plastid	71.56	70.26
TraesCS5D01G164800.1	Wheat	plastid	71.56	70.26
HORVU5Hr1G049980.4	Barley	plastid	71.38	65.31
TraesCS5A01G159800.1	Wheat	cytosol	71.38	64.0
Zm00001d000350_P001	Maize	plastid	45.35	63.54

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:102585784	MapMan:23.1.5.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	UniProt:M1CMI6	HAMAP:MF_01465
PFAM:PF00344	EnsemblPlantsGene:PGSC0003DMG400027471	PGSC:PGSC0003DMG400027471	EnsemblPlants:PGSC0003DMT400070672	PRINTS:PR00303	ScanProsite:PS00755
ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY	InterPro:SecY/SEC61-alpha
InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI000294ECC9	RefSeq:XP_006343553.1
SEG:seg	:	:	:	:	:

Description

Protein translocase secy subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400027471]

Coordinates

chr7:-:1968339..1977143

Molecular Weight (calculated)

58176.4 Da

IEP (calculated)

9.924

GRAVY (calculated)

0.242

Length

538 amino acids

Sequence
(BLAST)

001: MLITVREISS SSSSLCFNSK QLHSLKVNRV APICKASSLS FHKKSTAPSW NLGLFQSTNS CDSSVFDPLG INSGKSSWDN LVSLLSQTFE SSSNTRKEKN
101: SSARGLAAAI EDTSIDFGDF FKGPLPGKFL KLLGFLALSR LGIYIPLGGV NREAFVGNLD ENSILSTLDS FSGGGIGRLG ICSLGIVPFI NAQIVFQLLA
201: QIYPKLQELQ KREGEAGRKK VLQYTRYASV GFAVVQAIGQ VLFLRPYVND FSTQWAISSV VLLTLGSVFT TYIGERITDL KLGNGTSLLI FTNIISYLPA
301: SFGRTVAQAY QDGNYVGLVG ILVSFFLLVL SIVYVQEAER KIPLNYASRY TGRTGGGLQK SAYLPFKVNS SGVMPIIFST SSLALPGTLA RFTGVGFLRK
401: AAAGLNPGGS FYLPTNILLI AFFNYYYTFL QLDPDDVSDQ LKRQGASIPL VRPGKSTAAF IKTVLSRISV LGSAFLALLA AGPAVIEQAT HLTAFRGFAG
501: TSVLILVGCA TDTARKVQAE IISQKYKNIE FYDIDNKY

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.