Factsheet for TraesCS5D01G164800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G272500.1
TraesCS2B01G290700.1
TraesCS2D01G271800.1
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1
TraesCS5A01G159800.1
TraesCS5B01G157500.1
TraesCS5D01G164800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	TraesCS5A01G159800.1	AT2G18710.1	15988575
AT2G18710.1	TraesCS5B01G157500.1	AT2G18710.1	15988575
AT2G18710.1	TraesCS5D01G164800.1	AT2G18710.1	15988575
AT2G18710.1	TraesCS3A01G075700.1	AT2G28800.1	12217076
AT2G18710.1	TraesCS3B01G089800.1	AT2G28800.1	12217076
AT2G18710.1	TraesCS3D01G075800.1	AT2G28800.1	12217076
AT2G18710.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
AT2G18710.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
AT2G18710.1	TraesCS3D01G075800.1	AT2G28800.1	15988575
AT2G18710.1	TraesCS2A01G272500.1	AT4G14870.1	10207046
AT2G18710.1	TraesCS2B01G290700.1	AT4G14870.1	10207046
AT2G18710.1	TraesCS2D01G271800.1	AT4G14870.1	10207046
AT2G18710.1	TraesCS2A01G272500.1	AT4G14870.1	15988575
AT2G18710.1	TraesCS2B01G290700.1	AT4G14870.1	15988575
AT2G18710.1	TraesCS2D01G271800.1	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G157500.1	Wheat	plastid	98.72	98.72
HORVU5Hr1G049980.4	Barley	plastid	94.16	87.76
TraesCS5A01G159800.1	Wheat	cytosol	93.98	85.83
Os08t0254500-02	Rice	plastid	83.76	82.55
KRH63143	Soybean	endoplasmic reticulum	26.28	80.45
EES14786	Sorghum	plastid	80.84	80.25
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	29.56	76.78
Zm00001d000350_P001	Maize	plastid	52.19	74.48
VIT_11s0065g00940.t01	Wine grape	plastid	71.9	72.16
AT2G18710.1	Thale cress	plastid	72.26	71.87
Bra038815.1-P	Field mustard	plastid	72.08	71.69
Solyc07g006520.2.1	Tomato	plastid	70.07	71.64
PGSC0003DMT400070672	Potato	plastid	70.26	71.56
CDY49314	Canola	plastid	71.9	71.51
CDY13013	Canola	plastid	71.35	71.09
KRH54991	Soybean	plastid	69.71	70.74
GSMUA_Achr4P12710_001	Banana	plastid	71.72	70.56
TraesCS1D01G248100.2	Wheat	plastid	22.63	23.35

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0015031	GO:GO:0016020	InterPro:IPR023201	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303
ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY
InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G164800
EnsemblPlants:TraesCS5D01G164800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:256466034..256483540

Molecular Weight (calculated)

59137.7 Da

IEP (calculated)

10.085

GRAVY (calculated)

0.201

Length

548 amino acids

Sequence
(BLAST)

001: MATATPQQCC LPARARPPPT STPLRLRYLS RAASSFHFPG RRTVTARRRG RAALAFSPRC TLETGGPAFD PLGLYREDPS SSDYQPPFST LFGVLSPVFG
101: SSSGSRKEKS SYGRGAAAAM EDSTIDFGDF FKGPLPGKFL KLLGFLALSR LGVYIPLGGV NQAAFAGNLD QNSLLGTLDS FSGGGIGRLG ICSLGIVPFI
201: NAQIVFQLLT QLYPKLQELQ KKEGEAGRKK ILQYTRYASV GFAIAQAIGQ VLFLRPYVND FSTEWVLTSV TLLTLGSVFT TFLGETISEL KLGNGTSLLI
301: FTSIISYLPA SFGRTVAEGF QAGNYVGLLT IILSFFFLVL GIVYVQEAER KIPLNYASRY GSRTGGPQRS AYLPFKVNSS GVMPIIFSTS SLALPATLAR
401: FTGLDFLKKA AIALTPGGSF YLPTNVLLIA FFNYYYTFLQ LDPDELSEQL KRTGASIPLV RPGKNTAAFI KTVLSRISVL GSAFLAVLAA GPSVVEQISH
501: LTAFRGFAGT SVLILVGCAT DTARKVQTEI ISQKYKDIEF YDVKSSDK

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.