Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G062340.4 | Barley | plastid | 96.99 | 96.99 |
| TraesCS1A01G248600.1 | Wheat | plastid | 93.97 | 94.33 |
| TraesCS1B01G259300.2 | Wheat | plastid | 91.71 | 91.71 |
| Zm00001d038128_P004 | Maize | plastid | 80.98 | 82.06 |
| KXG21937 | Sorghum | plastid | 81.73 | 80.67 |
| Os05t0397700-01 | Rice | plastid | 81.36 | 79.7 |
| KRH38249 | Soybean | cytosol | 15.82 | 73.04 |
| GSMUA_Achr3P07370_001 | Banana | plasma membrane | 66.1 | 69.37 |
| CDY05267 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 12.81 | 61.26 |
| KRH67197 | Soybean | plastid | 64.22 | 60.46 |
| CDX84779 | Canola | plastid | 63.84 | 59.79 |
| AT2G31530.1 | Thale cress | plastid | 64.41 | 59.48 |
| Bra022846.1-P | Field mustard | plastid | 62.15 | 59.25 |
| CDY23936 | Canola | plastid | 64.03 | 59.23 |
| VIT_07s0104g00040.t01 | Wine grape | cytosol | 65.54 | 56.77 |
| Solyc09g065120.2.1 | Tomato | cytosol, plastid | 61.39 | 56.6 |
| KRG95514 | Soybean | plastid | 34.09 | 50.14 |
| CDX84169 | Canola | plasma membrane | 17.7 | 42.73 |
| CDY62161 | Canola | golgi, plastid, vacuole | 11.11 | 42.14 |
| CDX72502 | Canola | cytosol, nucleus, plasma membrane | 12.99 | 38.55 |
| CDX92207 | Canola | cytosol | 11.68 | 27.56 |
| Bra029080.1-P | Field mustard | mitochondrion | 11.11 | 25.99 |
| CDY68266 | Canola | cytosol, nucleus | 11.86 | 25.4 |
| Bra039109.1-P | Field mustard | nucleus | 12.62 | 23.43 |
| TraesCS5D01G164800.1 | Wheat | plastid | 23.35 | 22.63 |
| CDY51931 | Canola | cytosol, golgi, nucleus | 10.73 | 22.18 |
Protein Annotations
| Gene3D:1.10.3370.10 | MapMan:23.1.4.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009526 | GO:GO:0009536 | GO:GO:0009658 | GO:GO:0009987 |
| GO:GO:0010027 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0072598 | InterPro:IPR023201 |
| PFAM:PF00344 | PRINTS:PR00303 | PANTHER:PTHR10906 | PANTHER:PTHR10906:SF2 | SUPFAM:SSF103491 | InterPro:SecY/SEC61-alpha |
| InterPro:SecY_dom_sf | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1D01G248100 | EnsemblPlants:TraesCS1D01G248100.2 | SEG:seg | : |
Description
No Description!
Coordinates
chr1D:-:341032130..341041032
Molecular Weight (calculated)
58600.1 Da
IEP (calculated)
10.047
GRAVY (calculated)
0.282
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSLALSLP SRCALPLPSP RLAPKHPSLR ANQCRLLVRT PQRPLPPTRR LLLAPRASSS ATSPAEPARE GGAGGKKVPG FRNRFLDLAR LGAVAEGAAE
101: AFFRSEIRRR LAVTAVLIVL SRVGYFVPLP GFDRRLIPDS YLSFAPLPAD DLVDFASELK LSFFQLGISH QISASIVMQV LCHVLPSLEK IRKEGLDGHE
201: KIKSYIWWLS LGFAIVAACT VSCYSLQYSI YAASHRVKHV ILTSFLLVLG AMSTTWICDT ITESGFGHGS SLIICVGILT GYTNTLHKML TQFSGNVCTS
301: WPYILGVAGI FMMVTMGAVL VTEGCRKIKL QYYGFKLASS AGKENSPVTE VEPYIPFNIN PTGMQPLLTT SYLLAFPSIM ASIFRSPFWE NLKEILNPMT
401: SVGGSPWIYY LTYAFFVFVF NIFDIANLPK EISDYLNKMS ARVPKIKPGR ATVDYLTKIQ TSTRFWGGLL LSLLATSSLL LDRYLRQINE GFSIGFTSVL
501: IIVGSIIELR RSYQAYNVMP ALSKVLKRYG A
101: AFFRSEIRRR LAVTAVLIVL SRVGYFVPLP GFDRRLIPDS YLSFAPLPAD DLVDFASELK LSFFQLGISH QISASIVMQV LCHVLPSLEK IRKEGLDGHE
201: KIKSYIWWLS LGFAIVAACT VSCYSLQYSI YAASHRVKHV ILTSFLLVLG AMSTTWICDT ITESGFGHGS SLIICVGILT GYTNTLHKML TQFSGNVCTS
301: WPYILGVAGI FMMVTMGAVL VTEGCRKIKL QYYGFKLASS AGKENSPVTE VEPYIPFNIN PTGMQPLLTT SYLLAFPSIM ASIFRSPFWE NLKEILNPMT
401: SVGGSPWIYY LTYAFFVFVF NIFDIANLPK EISDYLNKMS ARVPKIKPGR ATVDYLTKIQ TSTRFWGGLL LSLLATSSLL LDRYLRQINE GFSIGFTSVL
501: IIVGSIIELR RSYQAYNVMP ALSKVLKRYG A
001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV
Arabidopsis Description
SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.