CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022846.1-P	Field mustard	plastid	97.18	98.92
CDY23936	Canola	plastid	96.47	95.3
AT2G31530.1	Thale cress	plastid	88.18	86.96
KRH38249	Soybean	cytosol	17.28	85.22
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	14.11	72.07
GSMUA_Achr3P07370_001	Banana	plasma membrane	60.67	67.98
TraesCS1A01G248600.1	Wheat	plastid	60.32	64.65
TraesCS1D01G248100.2	Wheat	plastid	59.79	63.84
Zm00001d038128_P004	Maize	plastid	58.91	63.74
HORVU1Hr1G062340.4	Barley	plastid	59.61	63.65
TraesCS1B01G259300.2	Wheat	plastid	59.08	63.09
KXG21937	Sorghum	plastid	59.08	62.27
VIT_07s0104g00040.t01	Wine grape	cytosol	67.2	62.15
Os05t0397700-01	Rice	plastid	58.73	61.44
Solyc09g065120.2.1	Tomato	cytosol, plastid	61.38	60.42
CDY62161	Canola	golgi, plastid, vacuole	13.93	56.43
CDX84169	Canola	plasma membrane	21.87	56.36
CDX72502	Canola	cytosol, nucleus, plasma membrane	16.75	53.07
CDX92207	Canola	cytosol	14.46	36.44
CDY68266	Canola	cytosol, nucleus	15.17	34.68
CDY51931	Canola	cytosol, golgi, nucleus	15.52	34.24
CDY13013	Canola	plastid	22.75	23.45
CDY49314	Canola	plastid	22.75	23.41

Protein Annotations

EnsemblPlants:CDX84779	EnsemblPlantsGene:GSBRNA2T00142072001	Gene3D:1.10.3370.10	GO:A0A078D8Y5	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	InterPro:IPR023201	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	PFAM:PF00344	PRINTS:PR00303	ProteinID:CDX84779	ProteinID:CDX84779.1
SEG:seg	SUPFAM:SSF103491	TMHMM:TMhelix	UniParc:UPI0004EE8E84	MapMan:23.1.4.2	:

Description

BnaA03g14510D

Coordinates

chrLK031838:-:1201560..1204782

Molecular Weight (calculated)

63347.4 Da

IEP (calculated)

9.471

GRAVY (calculated)

0.273

Length

567 amino acids

Sequence
(BLAST)

001: MNSSQACFFH SPLRPISLPQ PSFGFVSKRD PSLCYQPFRS RRCLTTSLNV SRARETCFLH LNRRERKSFS VSYSDKHINE SIGSDEVHTD ALDVEIVPQS
101: SVLSKALQDN NSRPKSFRNR FLDFVRISSV LNTAAERFFK SEIRRRLFVT AVLLVLSRVG YFIPLPGFDR RLIPQDYLSF VSGSVEELGE FGAEIKLSLF
201: QLGLSPQIIA SILMQVLCHV LPSLVKLRKE GLDGHEKIKS YIWWLSFFFA IVEGIVVACT SLQYSVFAAT AQVKHVMLTA SLLVCGAMTM TWLCDTISES
301: GFGHGSSLII CVGILTGYTE TLHKMLNQIS GSFTNWLPYL LGVLGIFTVV TMFAVVVTEG CRKIKLQYYG FKLASASSRE GSPITEVEPY IPFNINPAGM
401: QPVLTTTYLL AFPSILASIV GSPFLLHVKE ILNPESTVGA PPWVYYSVYA FFVFLFNIFD IANLPKEIAD YLNKMGARIP NIKPGKATIE YLTKIQASTR
501: FWGGLLLSFL ATSSSVLDHY LRSINQGFSI GFTSVLIIVG SIIELRRSYH AYNVMPSLSK ALKRYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.