CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77209
CDY13013
CDY29777
CDY31733
CDY49314

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	CDY13013	AT2G18710.1	15988575
AT2G18710.1	CDY49314	AT2G18710.1	15988575
AT2G18710.1	CDX77209	AT2G28800.1	12217076
AT2G18710.1	CDY31733	AT2G28800.1	12217076
AT2G18710.1	CDX77209	AT2G28800.1	15988575
AT2G18710.1	CDY31733	AT2G28800.1	15988575
AT2G18710.1	CDY29777	AT4G14870.1	10207046
AT2G18710.1	CDY29777	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49314	Canola	plastid	97.45	97.28
Bra038815.1-P	Field mustard	plastid	97.27	97.1
AT2G18710.1	Thale cress	plastid	92.91	92.74
KRH63143	Soybean	endoplasmic reticulum	27.09	83.24
KRH54991	Soybean	plastid	76.0	77.41
PGSC0003DMT400070672	Potato	plastid	74.73	76.39
Solyc07g006520.2.1	Tomato	plastid	74.18	76.12
VIT_11s0065g00940.t01	Wine grape	plastid	74.91	75.46
GSMUA_Achr4P12710_001	Banana	plastid	73.27	72.35
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	27.64	72.04
EES14786	Sorghum	plastid	72.18	71.92
Os08t0254500-02	Rice	plastid	72.36	71.58
TraesCS5D01G164800.1	Wheat	plastid	71.09	71.35
TraesCS5B01G157500.1	Wheat	plastid	70.91	71.17
HORVU5Hr1G049980.4	Barley	plastid	70.73	66.16
Zm00001d000350_P001	Maize	plastid	46.18	66.15
TraesCS5A01G159800.1	Wheat	cytosol	70.55	64.67
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	5.45	27.03
CDX84779	Canola	plastid	23.45	22.75
CDX72502	Canola	cytosol, nucleus, plasma membrane	7.27	22.35
CDY23936	Canola	plastid	23.27	22.3
CDY62161	Canola	golgi, plastid, vacuole	5.27	20.71
CDX84169	Canola	plasma membrane	8.18	20.45
CDX92207	Canola	cytosol	7.82	19.11
CDY68266	Canola	cytosol, nucleus	8.55	18.95
CDY51931	Canola	cytosol, golgi, nucleus	6.73	14.4

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	GO:A0A078FLF1	UniProt:A0A078FLF1	EnsemblPlants:CDY13013	ProteinID:CDY13013
ProteinID:CDY13013.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00070806001	InterPro:IPR023201	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303
ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY
InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI0004EBC844
SEG:seg	:	:	:	:	:

Description

BnaC07g03120DBnaC07g03120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLF1]

Coordinates

chrLK032030:+:325521..328290

Molecular Weight (calculated)

59320.8 Da

IEP (calculated)

9.906

GRAVY (calculated)

0.222

Length

550 amino acids

Sequence
(BLAST)

001: MITVSQVSSY SSSSSNLASL SRLNHKPSSR LRSSSLYRPI FSVPTKTRNT CKANSWKNLG LVINSRSSEV STFDPLGINP KEASGLSSIW ESFLSVLSPS
101: LESSSGSKRD KPSSGRGVAA AIEDSSIDFG DFFKGPLPGK FLKLLGFLAL SRLGIYIPLG GVNREAFVGN LDQNSLLTTL DTFSGGGIGR LGICSLGIVP
201: FINAQIVFQL LAQVYPKLQD LQKKEGEAGR KKILQYTRYA SVGFAIVQAI GQAVYLRPYV NDFSTEWVVS SVTLLTLGSV LTTYIGERIS DLKLGNGTSL
301: LIFTSIISYL PASFGRTAAE ALQEGNYTGL ATIVVSFLLL VLGIVYVQEA ERKIPLNYAS RYTSKAAGLQ KSAYLPFKVN SAGVMPIIFS TSSLALPATL
401: ARFTGISALK NIAYGLNPGC SFYLPTNILL IAFFNYYYTF LQLDPDDVSE QLKRQGASIP LVRPGKSTAL FIKTVLGRIS VLGSAFLAVL AAGPAVVEQI
501: THLTAFRGFA GTSVLILVGC ATDTARKVQA EIISQKYKNI EFYELDKYDP

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.