Factsheet for Solyc07g006520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g006520.2.1
Solyc11g066110.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	Solyc07g006520.2.1	AT2G18710.1	15988575
AT2G18710.1	Solyc11g066110.1.1	AT2G28800.1	12217076
AT2G18710.1	Solyc11g066110.1.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070672	Potato	plastid	97.57	97.21
KRH63143	Soybean	endoplasmic reticulum	27.61	82.68
VIT_11s0065g00940.t01	Wine grape	plastid	80.04	78.57
KRH54991	Soybean	plastid	76.87	76.3
AT2G18710.1	Thale cress	plastid	77.8	75.68
Bra038815.1-P	Field mustard	plastid	76.87	74.77
CDY49314	Canola	plastid	76.87	74.77
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	29.29	74.41
CDY13013	Canola	plastid	76.12	74.18
GSMUA_Achr4P12710_001	Banana	plastid	75.75	72.89
Os08t0254500-02	Rice	plastid	74.44	71.76
EES14786	Sorghum	plastid	73.32	71.2
TraesCS5B01G157500.1	Wheat	plastid	71.64	70.07
TraesCS5D01G164800.1	Wheat	plastid	71.64	70.07
HORVU5Hr1G049980.4	Barley	plastid	71.46	65.14
TraesCS5A01G159800.1	Wheat	cytosol	71.46	63.83
Zm00001d000350_P001	Maize	plastid	45.71	63.8
Solyc09g065120.2.1	Tomato	cytosol, plastid	22.39	20.83

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	UniProt:K4CBC3	HAMAP:MF_01465	PFAM:PF00344
PRINTS:PR00303	ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491
InterPro:SecY	InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	EnsemblPlantsGene:Solyc07g006520.2	EnsemblPlants:Solyc07g006520.2.1
TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI000276C5A0	SEG:seg	:	:

Description

No Description!

Coordinates

chr7:-:1318128..1325502

Molecular Weight (calculated)

58034.2 Da

IEP (calculated)

9.813

GRAVY (calculated)

0.227

Length

536 amino acids

Sequence
(BLAST)

001: MLITVREISS SSLCFNSKQL HSLKVNRVTP ICKASSLSFH KKSTAPSWNL GLFESTNSCD NSVFDPLGTN SGKSSWDNLV SLLSQTFESS SNTRKEKNSS
101: ARGLAAAIED TSIDFGDFFK GPLPGKFLKL LGFLALSRLG IYIPLGGVNR EAFVGNLDEN SILSTLDSFS GGGIGRLGIC SLGIVPFINA QIVFQLLAQI
201: YPKLQELQKR EGEAGRKKVL QYTRYASVGF AVVQAIGQVL FLRPYVNDFS TQWAISSVVL LTLGSVFTTY IGERITDLKL GNGTSLLIFT NIISYLPASF
301: GRTVAQAYQD GNYVGLVGIL VSFFLLVLSI VYVQEAERKI PLNYASRYTG RTGGGLQKSA YLPFKVNSSG VMPIIFSTSS LALPGTLARF TGVGFLRNAA
401: AGLNPGGSFY LPTNILLIAF FNYYYTFLQL DPDDVSDQLK RQGASIPLVR PGKSTAAFIK TVLSRISVLG SAFLALLAAG PAVIEQATHL TAFRGFAGTS
501: VLILVGCATD TARKVQAEII SQKYKNIEFY DIDNKY

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.