Factsheet for Zm00001d000349_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, cytosol

Predictor Summary:

mitochondrion 2
vacuole 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, vacuole
Any Predictor:	cytosol, mitochondrion, vacuole
iPSORT:	mitochondrion
MultiLoc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000349_P001
Zm00001d000350_P001
Zm00001d008625_P001
Zm00001d039852_P001
Zm00001d045144_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	Zm00001d000349_P001	AT2G18710.1	15988575
AT2G18710.1	Zm00001d000350_P001	AT2G18710.1	15988575
AT2G18710.1	Zm00001d008625_P001	AT2G28800.1	12217076
AT2G18710.1	Zm00001d039852_P001	AT2G28800.1	12217076
AT2G18710.1	Zm00001d008625_P001	AT2G28800.1	15988575
AT2G18710.1	Zm00001d039852_P001	AT2G28800.1	15988575
AT2G18710.1	Zm00001d045144_P001	AT4G14870.1	10207046
AT2G18710.1	Zm00001d045144_P001	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63143	Soybean	endoplasmic reticulum	68.25	80.45
EES14786	Sorghum	plastid	83.89	32.07
Os08t0254500-02	Rice	plastid	81.04	30.76
VIT_11s0065g00940.t01	Wine grape	plastid	77.73	30.04
TraesCS5B01G157500.1	Wheat	plastid	77.73	29.93
GSMUA_Achr4P12710_001	Banana	plastid	78.67	29.8
TraesCS5D01G164800.1	Wheat	plastid	76.78	29.56
PGSC0003DMT400070672	Potato	plastid	74.88	29.37
Solyc07g006520.2.1	Tomato	plastid	74.41	29.29
KRH54991	Soybean	plastid	73.93	28.89
Bra038815.1-P	Field mustard	plastid	72.51	27.77
CDY49314	Canola	plastid	72.51	27.77
AT2G18710.1	Thale cress	plastid	72.51	27.77
HORVU5Hr1G049980.4	Barley	plastid	77.25	27.72
CDY13013	Canola	plastid	72.04	27.64
TraesCS5A01G159800.1	Wheat	cytosol	77.25	27.17
Zm00001d038128_P004	Maize	plastid	22.75	9.16
Zm00001d000350_P001	Maize	plastid	4.27	2.34

Protein Annotations

EnsemblPlants:Zm00001d000349_P001	EnsemblPlants:Zm00001d000349_T001	EnsemblPlantsGene:Zm00001d000349	Gene3D:1.10.3370.10	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	InterPro:SecY/SEC61-alpha
InterPro:SecY_dom_sf	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	PFAM:PF00344	PRINTS:PR00303	SEG:seg
SUPFAM:SSF103491	TMHMM:TMhelix	UniParc:UPI000843D007	UniProt:A0A1X7YID0	MapMan:23.1.5.2	:

Description

Preprotein translocase subunit SCY1 chloroplastic

Coordinates

chrB73V4_ctg35:-:19508..27375

Molecular Weight (calculated)

22467.3 Da

IEP (calculated)

9.788

GRAVY (calculated)

0.255

Length

211 amino acids

Sequence
(BLAST)

001: MRSGEMGWWS MVSWREMAGL GMGGKGLGVG DEGLGAGRGV NSSGVMPIIF STSSLALPGT LARFSGLDFL KKAAIALNPG GALYLPTNVL LIAFFNYYYT
101: FLQLDPDDLS EQLKRQGASI PLVRPGKSTA AYIKTVLSRI SVLGSAFLAV LAAGPSLVEQ TSHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN
201: IEFYDVNRFG Q

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.