Factsheet for Zm00001d045144_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000349_P001
Zm00001d000350_P001
Zm00001d008625_P001
Zm00001d039852_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14870.1	Zm00001d000349_P001	AT2G18710.1	10207046
AT4G14870.1	Zm00001d000350_P001	AT2G18710.1	10207046
AT4G14870.1	Zm00001d000349_P001	AT2G18710.1	15988575
AT4G14870.1	Zm00001d000350_P001	AT2G18710.1	15988575
AT4G14870.1	Zm00001d008625_P001	AT2G28800.1	15988575
AT4G14870.1	Zm00001d039852_P001	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER87959	Sorghum	plastid	91.3	91.3
TraesCS2B01G290700.1	Wheat	plastid	61.41	65.7
TraesCS2A01G272500.1	Wheat	plastid	60.33	64.53
Os04t0306750-01	Rice	mitochondrion, nucleus, plastid	60.33	55.5
TraesCS2D01G271800.1	Wheat	plastid	60.33	53.62
KRH77853	Soybean	plastid	36.41	43.23
GSMUA_Achr3P05390_001	Banana	mitochondrion	40.22	40.44
AT4G14870.1	Thale cress	plastid	38.59	40.11
Bra036909.1-P	Field mustard	plastid	37.5	39.88
CDY29777	Canola	plastid	37.5	39.88
PGSC0003DMT400082126	Potato	plastid	37.5	38.55
VIT_05s0020g03510.t01	Wine grape	plastid	33.7	36.9
Os08t0399050-00	Rice	extracellular, plasma membrane	43.48	27.21

Protein Annotations

EnsemblPlants:Zm00001d045144_P001	EnsemblPlants:Zm00001d045144_T001	EnsemblPlantsGene:Zm00001d045144	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
ncoils:Coil	PANTHER:PTHR37240	ProteinID:AQL01644.1	SEG:seg	UniParc:UPI00022108A5	UniProt:K7V6D4
MapMan:23.1.5.3	:	:	:	:	:

Description

thylakoid assembly5 thylakoid assembly5

Coordinates

chr9:+:14222619..14223173

Molecular Weight (calculated)

19043.4 Da

IEP (calculated)

5.029

GRAVY (calculated)

-0.210

Length

184 amino acids

Sequence
(BLAST)

001: MATTPTTAIL RLTPAPSPRT ARHPRSATFL QPALSVSLSY SLPDCRNHRL AAASKDTASS KGQEQDQEPA PSAPQEGGPE KVTEVGAASP GEKSPEAVAA
101: ELKEVLRARK EAEAAEGRGG WWAGVAQEMT EIEWPAPGKV LGTTGVVLGV IAGSTVALLS VNALLAELSD TVFAGRGLQD FFSG

Best Arabidopsis Sequence Match ( AT4G14870.1 )
(BLAST)

001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS

Arabidopsis Description

SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.