Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G290700.1 | Wheat | plastid | 97.67 | 97.67 |
| TraesCS2D01G271800.1 | Wheat | plastid | 94.19 | 78.26 |
| EER87959 | Sorghum | plastid | 64.53 | 60.33 |
| Zm00001d045144_P001 | Maize | plastid | 64.53 | 60.33 |
| Os04t0306750-01 | Rice | mitochondrion, nucleus, plastid | 56.4 | 48.5 |
| KRH77853 | Soybean | plastid | 37.79 | 41.94 |
| VIT_05s0020g03510.t01 | Wine grape | plastid | 37.79 | 38.69 |
| AT4G14870.1 | Thale cress | plastid | 39.53 | 38.42 |
| Bra036909.1-P | Field mustard | plastid | 37.21 | 36.99 |
| CDY29777 | Canola | plastid | 37.21 | 36.99 |
| GSMUA_Achr3P05390_001 | Banana | mitochondrion | 38.95 | 36.61 |
| PGSC0003DMT400082126 | Potato | plastid | 37.21 | 35.75 |
| Os08t0399050-00 | Rice | extracellular, plasma membrane | 41.86 | 24.49 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G272500.1 | EnsemblPlantsGene:TraesCS2A01G272500 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | PANTHER:PTHR37240 |
| SEG:seg | TMHMM:TMhelix | MapMan:23.1.5.3 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:446019914..446020432
Molecular Weight (calculated)
18012.3 Da
IEP (calculated)
5.037
GRAVY (calculated)
-0.171
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTSTTPFH RLLAPARSNP AARLSLYTRG PPTLSFSRSI SVRRRLAAAS KDTASDKGQE QESSTVAGGA AEPAEEETPP GEKTSDEVAT ELKEVMRARK
101: EAEVAAGGGG WWAGVAQEMT EIEWPAPGKV LGTTGVVLGI IAGSTVALLS VNAILAELSD RVFVGRGLQD FF
101: EAEVAAGGGG WWAGVAQEMT EIEWPAPGKV LGTTGVVLGI IAGSTVALLS VNAILAELSD RVFVGRGLQD FF
001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
Arabidopsis Description
SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.