CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812
KRH54991
KRH63143

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14870.1	KRH54991	AT2G18710.1	10207046
AT4G14870.1	KRH63143	AT2G18710.1	10207046
AT4G14870.1	KRH54991	AT2G18710.1	15988575
AT4G14870.1	KRH63143	AT2G18710.1	15988575
AT4G14870.1	KRH24811	AT2G28800.1	15988575
AT4G14870.1	KRH29812	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g03510.t01	Wine grape	plastid	45.16	41.67
PGSC0003DMT400082126	Potato	plastid	47.74	41.34
Bra036909.1-P	Field mustard	plastid	45.81	41.04
CDY29777	Canola	plastid	45.81	41.04
TraesCS2B01G290700.1	Wheat	plastid	42.58	38.37
GSMUA_Achr3P05390_001	Banana	mitochondrion	45.16	38.25
TraesCS2A01G272500.1	Wheat	plastid	41.94	37.79
AT4G14870.1	Thale cress	plastid	42.58	37.29
Zm00001d045144_P001	Maize	plastid	43.23	36.41
EER87959	Sorghum	plastid	42.58	35.87
TraesCS2D01G271800.1	Wheat	plastid	43.23	32.37
Os04t0306750-01	Rice	mitochondrion, nucleus, plastid	39.35	30.5
Os08t0399050-00	Rice	extracellular, plasma membrane	32.26	17.01

Protein Annotations

EMBL:ACUP02000685	EnsemblPlants:KRH77853	EnsemblPlantsGene:GLYMA_01G237800	EntrezGene:102665921	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0016020	ncoils:Coil	PANTHER:PTHR37240	ProteinID:KRH77853	ProteinID:KRH77853.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0002964F74	UniProt:K7K5J1	MapMan:23.1.5.3	:	:

Description

hypothetical protein

Coordinates

chr1:+:56251141..56253903

Molecular Weight (calculated)

16697.0 Da

IEP (calculated)

4.700

GRAVY (calculated)

-0.024

Length

155 amino acids

Sequence
(BLAST)

001: MAVQAFYHLG SPLTSQSHFP SPPLRLTLTA SAPFKPRPLA SIGISPLPER RRMPVAGAVE ESQESSEPEA EADLASELKK AMAERKEKEE ENMLSGVARE
101: IDEIEWPAFG KVLGTTGVVL SVIFGSSVVL LSVNAVLAEI SDRVFAGKGI QDFFT

Best Arabidopsis Sequence Match ( AT4G14870.1 )
(BLAST)

001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS

Arabidopsis Description

SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.