CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 5
cytosol 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24811
KRH29812
KRH54991
KRH63143
KRH77853

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	KRH54991	AT2G18710.1	15988575
AT2G18710.1	KRH63143	AT2G18710.1	15988575
AT2G18710.1	KRH24811	AT2G28800.1	12217076
AT2G18710.1	KRH29812	AT2G28800.1	12217076
AT2G18710.1	KRH24811	AT2G28800.1	15988575
AT2G18710.1	KRH29812	AT2G28800.1	15988575
AT2G18710.1	KRH77853	AT4G14870.1	10207046
AT2G18710.1	KRH77853	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	80.45	68.25
KRH54991	Soybean	plastid	92.74	30.74
VIT_11s0065g00940.t01	Wine grape	plastid	84.92	27.84
PGSC0003DMT400070672	Potato	plastid	83.24	27.7
Solyc07g006520.2.1	Tomato	plastid	82.68	27.61
GSMUA_Achr4P12710_001	Banana	plastid	85.47	27.47
CDY49314	Canola	plastid	83.8	27.22
AT2G18710.1	Thale cress	plastid	83.8	27.22
CDY13013	Canola	plastid	83.24	27.09
Bra038815.1-P	Field mustard	plastid	83.24	27.04
EES14786	Sorghum	plastid	82.12	26.63
Os08t0254500-02	Rice	plastid	82.12	26.44
TraesCS5B01G157500.1	Wheat	plastid	80.45	26.28
TraesCS5D01G164800.1	Wheat	plastid	80.45	26.28
HORVU5Hr1G049980.4	Barley	plastid	81.01	24.66
TraesCS5A01G159800.1	Wheat	cytosol	81.01	24.17
KRH38249	Soybean	cytosol	14.53	22.61
KRH67197	Soybean	plastid	24.02	7.62
KRG95514	Soybean	plastid	3.35	1.66
Zm00001d000350_P001	Maize	plastid	0.56	0.26

Protein Annotations

Gene3D:1.10.3370.10	EntrezGene:100808959	MapMan:23.1.5.2	EMBL:ACUP02002616	EnsemblPlantsGene:GLYMA_04G157300	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201
UniProt:K7KK87	EnsemblPlants:KRH63143	ProteinID:KRH63143	ProteinID:KRH63143.1	PFAM:PF00344	PRINTS:PR00303
PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix
UniParc:UPI000233A083	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:37119366..37121693

Molecular Weight (calculated)

19567.9 Da

IEP (calculated)

9.290

GRAVY (calculated)

0.391

Length

179 amino acids

Sequence
(BLAST)

001: MEYCAPLYQV NSSGVMPIIF STSSLALPGT LARFTGLTAL KKASVALNPG GSFYLPFNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGRSAA
101: TFIKTVLSRI SVLGSTFLAI LAAGPTVVEQ ITHLTAFRGF VGTSILILVG CATDTARKVQ AEIISQKYKN IEFYDFDKY

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.