Factsheet for Os08t0254500-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0151200-01
Os04t0306750-01
Os08t0254500-02
Os08t0399050-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	Os08t0254500-02	AT2G18710.1	15988575
AT2G18710.1	Os01t0151200-01	AT2G28800.1	12217076
AT2G18710.1	Os01t0151200-01	AT2G28800.1	15988575
AT2G18710.1	Os04t0306750-01	AT4G14870.1	10207046
AT2G18710.1	Os08t0399050-00	AT4G14870.1	10207046
AT2G18710.1	Os04t0306750-01	AT4G14870.1	15988575
AT2G18710.1	Os08t0399050-00	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14786	Sorghum	plastid	85.07	85.69
TraesCS5B01G157500.1	Wheat	plastid	83.09	84.31
TraesCS5D01G164800.1	Wheat	plastid	82.55	83.76
KRH63143	Soybean	endoplasmic reticulum	26.44	82.12
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	30.76	81.04
Zm00001d000350_P001	Maize	plastid	55.04	79.69
HORVU5Hr1G049980.4	Barley	plastid	80.58	76.19
VIT_11s0065g00940.t01	Wine grape	plastid	73.56	74.91
Solyc07g006520.2.1	Tomato	plastid	71.76	74.44
PGSC0003DMT400070672	Potato	plastid	71.94	74.35
TraesCS5A01G159800.1	Wheat	cytosol	80.22	74.33
GSMUA_Achr4P12710_001	Banana	plastid	73.74	73.61
KRH54991	Soybean	plastid	71.22	73.33
Bra038815.1-P	Field mustard	plastid	72.3	72.96
CDY49314	Canola	plastid	72.12	72.78
AT2G18710.1	Thale cress	plastid	72.12	72.78
CDY13013	Canola	plastid	71.58	72.36
Os05t0397700-01	Rice	plastid	22.84	23.43

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	EntrezGene:4345097	EMBL:AK072225	ProteinID:BAC98517.1	ProteinID:BAC98535.1
ProteinID:BAF23295.1	ProteinID:BAT04569.1	ProteinID:EAZ42069.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	HAMAP:MF_01465
EnsemblPlantsGene:Os08g0254500	EnsemblPlants:Os08t0254500-02	PFAM:PF00344	PRINTS:PR00303	ScanProsite:PS00755	ScanProsite:PS00756
PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	UniProt:Q6ZG25	SUPFAM:SSF103491	InterPro:SecY	InterPro:SecY/SEC61-alpha
InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI00001D6B70	RefSeq:XP_015650895.1
SEG:seg	:	:	:	:	:

Description

SECYSimilar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY). (Os08t0254500-01);Similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY). (Os08t0254500-02);Similar to Preprotein translocase subunit secY, chloroplastic. (Os08t0254500-03)

Coordinates

chr8:+:9405709..9414700

Molecular Weight (calculated)

59533.1 Da

IEP (calculated)

10.180

GRAVY (calculated)

0.186

Length

556 amino acids

Sequence
(BLAST)

001: MAAMATPQQC WLPTRARAPP PPPPRAPSSA SPVSGAPASL RFRGRRAASA SASAARRRRG ASLPCSPRCA LETAGPGFDP LGLYNDGPSR NDTQSPLSNF
101: FGVLSPVFGS SSGGRKEKSY GRGAAAAIED SSIDIGDFFK GPLPGKFLKL LGYLALSRLG IYIPLGGVNR DAFAGNLDQN SLLGTLDSFS GGGIGRLGIC
201: SLGIVPFINA QIVFQLLAQL YPKLQDLQKK EGEAGRKKVL QYTRYASVGF AIVQAIGQVL FLRPYVNDFS TEWVLTSVTL LTLGSVFTTF IGERISDLKL
301: GNGTSLLIFT SIISYLPASF GRTVAQAFQD GNYVGLLTII LSFLFLVLGI VYVQEAERKI PLNYASRYSS RSGGLQRSAY LPFKVNSSGV MPIIFSTSSL
401: ALPGTLARFT GLEFLKKAAI SLNPGGALYI PTNVLLIAFF NYYYTFLQLD PDDLSEQLKR QGASIPLVRP GKSTAAFIKT VLSNISVLGS AFLAVLAAGP
501: SVVEQITHLT AFRGFAGTSV LILVGCATDT ARKVQAEIIS QKYKNIEFYD VNRFDQ

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.