Factsheet for HORVU5Hr1G049980.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G013690.6
HORVU5Hr1G049980.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	HORVU5Hr1G049980.4	AT2G18710.1	15988575
AT2G18710.1	HORVU3Hr1G013690.6	AT2G28800.1	12217076
AT2G18710.1	HORVU3Hr1G013690.6	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G159800.1	Wheat	cytosol	96.43	94.5
TraesCS5D01G164800.1	Wheat	plastid	87.76	94.16
TraesCS5B01G157500.1	Wheat	plastid	87.76	94.16
KRH63143	Soybean	endoplasmic reticulum	24.66	81.01
Os08t0254500-02	Rice	plastid	76.19	80.58
EES14786	Sorghum	plastid	75.51	80.43
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	27.72	77.25
Zm00001d000350_P001	Maize	plastid	48.64	74.48
GSMUA_Achr4P12710_001	Banana	plastid	68.37	72.17
CDY49314	Canola	plastid	67.01	71.51
Bra038815.1-P	Field mustard	plastid	67.01	71.51
Solyc07g006520.2.1	Tomato	plastid	65.14	71.46
VIT_11s0065g00940.t01	Wine grape	plastid	66.33	71.43
PGSC0003DMT400070672	Potato	plastid	65.31	71.38
AT2G18710.1	Thale cress	plastid	66.5	70.96
KRH54991	Soybean	plastid	64.97	70.74
CDY13013	Canola	plastid	66.16	70.73
HORVU1Hr1G062340.4	Barley	plastid	19.9	22.03

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	UniProt:A0A287R5K9	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009579	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU5Hr1G049980	EnsemblPlants:HORVU5Hr1G049980.4
InterPro:IPR023201	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303	ScanProsite:PS00755	ScanProsite:PS00756
PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY	InterPro:SecY/SEC61-alpha	InterPro:SecY_CS
InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	UniParc:UPI000B4666AF	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:388208862..388241146

Molecular Weight (calculated)

63471.7 Da

IEP (calculated)

10.103

GRAVY (calculated)

0.155

Length

588 amino acids

Sequence
(BLAST)

001: QNEQAEEACS TASSSFRLAL SPGKTHHPLV SFLRHRSRGT MATATPQQCC LPARALPPPT SAPLRLRHLT RAASSFHFPG RRTATARRRG RAAFAFSPRC
101: TLETGGPAFD PLGLYREDPS SSDYQSPFLT FFGVLSPVFG SSSGSRKEKS SYGRGAAAAM EDSTIDFGDF FKGPLPGKFL KLLGFLALSR LGVYIPLGGV
201: NQAAFAGNLD QNSLLGTLDS FSGGGIGRLG ICSLGIVPFI NAQIVFQLLT QLYPKLQELQ KKEGEAGRKK ILQYTRYASV GFAIAQAIGQ VLFLRPYVND
301: FSTEWVLTSV TLLTLGSVFT TFLGETISEL KLGNGTSLLI FTSIISYLPA SFGRTVAEGF QAGNYVGLLT IILSFFFLVL GIVYVQEAER KIPLNYASRY
401: GSRTGGPQRS AYLPFKVNSS GVMPIIFSTS SLALPATLAR FTGLDFLKKA AIALTPGGSF YLPTNVLLIA FFNYYYTFLQ LDPDDLSEQL KRTGASIPLV
501: RPGKNTAAFI KTVLSRISVL GSAFLAVLAA GPSVVEQISH LTAFRGFAGT SVLILVGCAT DTARKVQTEI ISQKYKDIEF YDVKSSDK

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.