CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87959
EES14786
KXG31875

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	EES14786	AT2G18710.1	15988575
AT2G18710.1	KXG31875	AT2G28800.1	12217076
AT2G18710.1	KXG31875	AT2G28800.1	15988575
AT2G18710.1	EER87959	AT4G14870.1	10207046
AT2G18710.1	EER87959	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000350_P001	Maize	plastid	62.32	89.58
Os08t0254500-02	Rice	plastid	85.69	85.07
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	32.07	83.89
KRH63143	Soybean	endoplasmic reticulum	26.63	82.12
TraesCS5B01G157500.1	Wheat	plastid	80.8	81.39
TraesCS5D01G164800.1	Wheat	plastid	80.25	80.84
HORVU5Hr1G049980.4	Barley	plastid	80.43	75.51
VIT_11s0065g00940.t01	Wine grape	plastid	73.91	74.73
GSMUA_Achr4P12710_001	Banana	plastid	75.36	74.69
TraesCS5A01G159800.1	Wheat	cytosol	80.25	73.83
AT2G18710.1	Thale cress	plastid	73.37	73.5
Solyc07g006520.2.1	Tomato	plastid	71.2	73.32
PGSC0003DMT400070672	Potato	plastid	71.38	73.23
KRH54991	Soybean	plastid	71.56	73.15
CDY49314	Canola	plastid	72.1	72.23
Bra038815.1-P	Field mustard	plastid	72.1	72.23
CDY13013	Canola	plastid	71.92	72.18
KXG21937	Sorghum	plastid	22.28	22.86

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	EntrezGene:8082432	UniProt:C5YJJ6	EnsemblPlants:EES14786	ProteinID:EES14786
ProteinID:EES14786.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303
ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	EnsemblPlantsGene:SORBI_3007G090537	SUPFAM:SSF103491
unigene:Sbi.8969	InterPro:SecY	InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967
TMHMM:TMhelix	UniParc:UPI0001A87F41	RefSeq:XP_002445291.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:-:14199576..14208539

Molecular Weight (calculated)

59360.0 Da

IEP (calculated)

10.092

GRAVY (calculated)

0.222

Length

552 amino acids

Sequence
(BLAST)

001: MATATATPPQ CWRGLPASAR APPPLSSPLR PRPVAAHFYP LRRRIATATA RGRRAPLACS PRCTLETAGP GFDPLGLYEE GSDSPSRSPL SNFFGILAPV
101: FGSSSGGGAR REKASYGRGA AAAIEDSSID IGDFFKGPLP GKFLKLLGFL ALSRLGVYIP LGGVNREAFA GNLDQNSLLG TLDSFSGGGI GRLGICSLGI
201: VPFINAQIVF QLLAQLYPKL QDLQRKEGEA GRKKVLQYTR YASVGFAIFQ AIGQVLYLRP YVNDFSTEWV LTSVTLLTLG SVFTTFIGER ISDLKLGNGT
301: SLLIFTSIIS YLPASFGRTV AQAFQDGNYV GLLTIILSFF LLVLGIVYVQ EAERKIPLNY ASRYSSRTGG LQRSAYLPFK VNSSGVMPII FSTSSLALPG
401: TLARFAGLDF LKKAAIALNP GGALYLPTNV LLIAFFNYYY TFLQLDPDDL SEQLKRQGAS IPLVRPGKST AAYIKTVLSR ISVLGSAFLA VLAAGPSVVE
501: QISHLTAFRG FAGTSVLILV GCATDTARKV QAEIISQKYK NIEFYDVNRF DQ

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.