Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13013 | Canola | plastid | 92.74 | 92.91 |
| Bra038815.1-P | Field mustard | plastid | 92.38 | 92.38 |
| CDY49314 | Canola | plastid | 92.2 | 92.2 |
| KRH63143 | Soybean | endoplasmic reticulum | 27.22 | 83.8 |
| KRH54991 | Soybean | plastid | 76.95 | 78.52 |
| PGSC0003DMT400070672 | Potato | plastid | 76.22 | 78.07 |
| Solyc07g006520.2.1 | Tomato | plastid | 75.68 | 77.8 |
| VIT_11s0065g00940.t01 | Wine grape | plastid | 75.68 | 76.37 |
| EES14786 | Sorghum | plastid | 73.5 | 73.37 |
| GSMUA_Achr4P12710_001 | Banana | plastid | 73.68 | 72.89 |
| Zm00001d000349_P001 | Maize | cytosol, endoplasmic reticulum, vacuole | 27.77 | 72.51 |
| TraesCS5D01G164800.1 | Wheat | plastid | 71.87 | 72.26 |
| Os08t0254500-02 | Rice | plastid | 72.78 | 72.12 |
| TraesCS5B01G157500.1 | Wheat | plastid | 71.51 | 71.9 |
| Zm00001d000350_P001 | Maize | plastid | 46.64 | 66.93 |
| HORVU5Hr1G049980.4 | Barley | plastid | 70.96 | 66.5 |
| TraesCS5A01G159800.1 | Wheat | cytosol | 71.14 | 65.33 |
| AT2G31530.1 | Thale cress | plastid | 22.87 | 21.91 |
Protein Annotations
| Gene3D:1.10.3370.10 | MapMan:23.1.5.2 | EntrezGene:816386 | UniProt:A0A178VZD7 | ProteinID:AAD08940.1 | ProteinID:AEC06796.1 |
| EMBL:AF424550 | ArrayExpress:AT2G18710 | EnsemblPlantsGene:AT2G18710 | RefSeq:AT2G18710 | TAIR:AT2G18710 | RefSeq:AT2G18710-TAIR-G |
| EnsemblPlants:AT2G18710.1 | TAIR:AT2G18710.1 | EMBL:AY058103 | EMBL:AY065093 | Unigene:At.10218 | EMBL:BT002632 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009987 | GO:GO:0010027 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | InterPro:IPR023201 | HAMAP:MF_01465 | RefSeq:NP_179461.1 | ProteinID:OAP10202.1 | PFAM:PF00344 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00303 | ScanProsite:PS00755 | ScanProsite:PS00756 | PANTHER:PTHR10906 | PANTHER:PTHR10906:SF9 |
| UniProt:Q38885 | Symbol:SCY1 | SUPFAM:SSF103491 | InterPro:SecY | InterPro:SecY/SEC61-alpha | InterPro:SecY_CS |
| InterPro:SecY_dom_sf | TIGRFAMs:TIGR00967 | TMHMM:TMhelix | EMBL:U37247 | UniParc:UPI0000000D2E | SEG:seg |
Description
SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
Coordinates
chr2:-:8112084..8114485
Molecular Weight (calculated)
59495.7 Da
IEP (calculated)
9.877
GRAVY (calculated)
0.214
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.