Factsheet for TraesCS5A01G159800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane, plastid
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G272500.1
TraesCS2B01G290700.1
TraesCS2D01G271800.1
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1
TraesCS5A01G159800.1
TraesCS5B01G157500.1
TraesCS5D01G164800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18710.1	TraesCS5A01G159800.1	AT2G18710.1	15988575
AT2G18710.1	TraesCS5B01G157500.1	AT2G18710.1	15988575
AT2G18710.1	TraesCS5D01G164800.1	AT2G18710.1	15988575
AT2G18710.1	TraesCS3A01G075700.1	AT2G28800.1	12217076
AT2G18710.1	TraesCS3B01G089800.1	AT2G28800.1	12217076
AT2G18710.1	TraesCS3D01G075800.1	AT2G28800.1	12217076
AT2G18710.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
AT2G18710.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
AT2G18710.1	TraesCS3D01G075800.1	AT2G28800.1	15988575
AT2G18710.1	TraesCS2A01G272500.1	AT4G14870.1	10207046
AT2G18710.1	TraesCS2B01G290700.1	AT4G14870.1	10207046
AT2G18710.1	TraesCS2D01G271800.1	AT4G14870.1	10207046
AT2G18710.1	TraesCS2A01G272500.1	AT4G14870.1	15988575
AT2G18710.1	TraesCS2B01G290700.1	AT4G14870.1	15988575
AT2G18710.1	TraesCS2D01G271800.1	AT4G14870.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G049980.4	Barley	plastid	94.5	96.43
TraesCS5D01G164800.1	Wheat	plastid	85.83	93.98
TraesCS5B01G157500.1	Wheat	plastid	85.5	93.61
KRH63143	Soybean	endoplasmic reticulum	24.17	81.01
EES14786	Sorghum	plastid	73.83	80.25
Os08t0254500-02	Rice	plastid	74.33	80.22
Zm00001d000349_P001	Maize	cytosol, endoplasmic reticulum, vacuole	27.17	77.25
Zm00001d000350_P001	Maize	plastid	47.5	74.22
VIT_11s0065g00940.t01	Wine grape	plastid	65.33	71.79
GSMUA_Achr4P12710_001	Banana	plastid	66.5	71.63
Solyc07g006520.2.1	Tomato	plastid	63.83	71.46
PGSC0003DMT400070672	Potato	plastid	64.0	71.38
CDY49314	Canola	plastid	65.33	71.14
Bra038815.1-P	Field mustard	plastid	65.33	71.14
AT2G18710.1	Thale cress	plastid	65.33	71.14
KRH54991	Soybean	plastid	63.83	70.93
CDY13013	Canola	plastid	64.67	70.55
TraesCS1A01G248600.1	Wheat	plastid	19.67	22.31

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.5.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0015031	GO:GO:0016020	InterPro:IPR023201	HAMAP:MF_01465	PFAM:PF00344	PRINTS:PR00303
ScanProsite:PS00755	ScanProsite:PS00756	PANTHER:PTHR10906	PANTHER:PTHR10906:SF9	SUPFAM:SSF103491	InterPro:SecY
InterPro:SecY/SEC61-alpha	InterPro:SecY_CS	InterPro:SecY_dom_sf	TIGRFAMs:TIGR00967	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G159800
EnsemblPlants:TraesCS5A01G159800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:341128617..341140414

Molecular Weight (calculated)

64868.4 Da

IEP (calculated)

10.119

GRAVY (calculated)

0.163

Length

600 amino acids

Sequence
(BLAST)

001: MFCAIHSNWA EVNNERADEA CSTASSSFRL ALSPKKTHHP LVSFLRHRLR GTMATATPQQ CCLPVRARPP PTSTPLRLRY LTRAASSFHF PGRRTATARR
101: RGRAAFAFSP RCTLETGGPA FDPLGLYGED PSSSDYQSPF STLFGVLSPV FGSSSGSRKE KSSYGRGAAA AMEDSTIDFG DFFKGPLPGK FLKLLGFLAL
201: SRLGVYIPLG GVNQAAFAGN LDQNSLLGTL DSFSGGGIGR LGICSLGIVP FINAQIVFQL LTQLYPKLQE LQKKEGEAGR KKILQYTRYA SVGFAIAQAI
301: GQVLFLRPYV NDFSTAWVLT SVTLLTLGSV FTTFLGETIS ELKLGNGTSL LIFTSIISYL PASFGRTVAE GFQAGNYVGL LTIILSFFFL VLGIVYVQEA
401: ERKIPLNYAS RYGSRTGGPQ RSAYLPFKVN SSGVMPIIFS TSSLALPATL ARFTGLDFLK KAAIALTPGG SFYLPTNVLL IAFFNYYYTF LQLDPDDLSE
501: QLKRTGASIP LVRPGKNTAA FIKTVLSRIS VLGSAFLAVL AAGPSVVEQI SHLTAFRGFA GTSVLILVGC ATDTARKVQT EIISQKYKDI EFYDVKSSDK

Best Arabidopsis Sequence Match ( AT2G18710.1 )
(BLAST)

001: MITVSEVSSY SSSSSNFASL SRLNHKSSSR LRSSSLYKGS FFSVSTKTRR NTCKAKSWNL GLVINSRSSE ASVFDPLGIN PDETSGLSSI WESFVSLLSP
101: SFESSSGNRR DKPSSGRGVA AAIEDSSIDF GDFFKGPLPG KFLKLLGFLA LSRLGIYIPL GGVNREAFVG NLDQNSILST LDTFSGGGIG RLGICSLGIV
201: PFINAQIVFQ LLAQVYPKLQ DLQKKEGEAG RKKILQYTRY ASVGFAIVQA IGQVFYLRPY VNDFSTEWVV SSVTLLTLGS VLTTYIGERI SDLKLGNGTS
301: LLIFTSIISY LPASFGRTTA EALQEGNYTG LGTIVVSFLL LVLGIVYVQE AERKIPLNYA SRYTSKAGGL QKSAYLPFKV NSAGVMPIIF STSSLALPAT
401: LARFTGISAL KNVAFALTPG GSFYLPTNIL LIAFFNYYYT FLQLDPDDVS EQLKRQGASI PLVRPGKSTA LFIKTVLGRI SVLGSAFLAV LAAGPAVVEQ
501: ITHLTAFRGF AGTSVLILVG CATDTARKVQ AEIISQKYKN IEFYELDKYD P

Arabidopsis Description

SCY1SCY1 [Source:UniProtKB/TrEMBL;Acc:A0A178VZD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.