Factsheet for TraesCS2D01G271800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G075700.1
TraesCS3B01G089800.1
TraesCS3D01G075800.1
TraesCS5A01G159800.1
TraesCS5B01G157500.1
TraesCS5D01G164800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14870.1	TraesCS5A01G159800.1	AT2G18710.1	10207046
AT4G14870.1	TraesCS5B01G157500.1	AT2G18710.1	10207046
AT4G14870.1	TraesCS5D01G164800.1	AT2G18710.1	10207046
AT4G14870.1	TraesCS5A01G159800.1	AT2G18710.1	15988575
AT4G14870.1	TraesCS5B01G157500.1	AT2G18710.1	15988575
AT4G14870.1	TraesCS5D01G164800.1	AT2G18710.1	15988575
AT4G14870.1	TraesCS3A01G075700.1	AT2G28800.1	15988575
AT4G14870.1	TraesCS3B01G089800.1	AT2G28800.1	15988575
AT4G14870.1	TraesCS3D01G075800.1	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G272500.1	Wheat	plastid	78.26	94.19
TraesCS2B01G290700.1	Wheat	plastid	78.26	94.19
EER87959	Sorghum	plastid	53.62	60.33
Zm00001d045144_P001	Maize	plastid	53.62	60.33
Os04t0306750-01	Rice	mitochondrion, nucleus, plastid	48.79	50.5
KRH77853	Soybean	plastid	32.37	43.23
VIT_05s0020g03510.t01	Wine grape	plastid	32.37	39.88
PGSC0003DMT400082126	Potato	plastid	32.85	37.99
AT4G14870.1	Thale cress	plastid	31.88	37.29
GSMUA_Achr3P05390_001	Banana	mitochondrion	32.85	37.16
Bra036909.1-P	Field mustard	plastid	29.95	35.84
CDY29777	Canola	plastid	29.95	35.84
Os08t0399050-00	Rice	extracellular, plasma membrane	37.2	26.19

Protein Annotations

EnsemblPlants:TraesCS2D01G271800.1	EnsemblPlantsGene:TraesCS2D01G271800	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	PANTHER:PTHR37240
SEG:seg	TMHMM:TMhelix	MapMan:23.1.5.3	:	:	:

Description

No Description!

Coordinates

chr2D:-:335546897..335547520

Molecular Weight (calculated)

21584.5 Da

IEP (calculated)

5.393

GRAVY (calculated)

-0.195

Length

207 amino acids

Sequence
(BLAST)

001: MGAWLGRGFD PFPLCLISGA KKPPAPAAEP TKTEAMATTS TTPFHRLLAP ARSNPAARLS LYTRGPPTLS FSRSISVRRR LAAASKDTAS DKGQEQESST
101: AAGGAAEPAE EETPPGEKSS DEVATELKEV MRARKEAEVA AGGGGWWAGV AQEMTEIEWP APGKVLGTTG VVLGIIAGST VALLSVNAFL AELSDRVFAG
201: RGLQDFF

Best Arabidopsis Sequence Match ( AT4G14870.1 )
(BLAST)

001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS

Arabidopsis Description

SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.