Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0151200-01 | |
| Os08t0254500-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14870.1 | Os08t0254500-02 | AT2G18710.1 | 10207046 |
| AT4G14870.1 | Os08t0254500-02 | AT2G18710.1 | 15988575 |
| AT4G14870.1 | Os01t0151200-01 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER87959 | Sorghum | plastid | 57.5 | 62.5 |
| Zm00001d045144_P001 | Maize | plastid | 55.5 | 60.33 |
| TraesCS2B01G290700.1 | Wheat | plastid | 49.0 | 56.98 |
| TraesCS2A01G272500.1 | Wheat | plastid | 48.5 | 56.4 |
| TraesCS2D01G271800.1 | Wheat | plastid | 50.5 | 48.79 |
| KRH77853 | Soybean | plastid | 30.5 | 39.35 |
| Bra036909.1-P | Field mustard | plastid | 33.0 | 38.15 |
| CDY29777 | Canola | plastid | 33.0 | 38.15 |
| PGSC0003DMT400082126 | Potato | plastid | 33.5 | 37.43 |
| AT4G14870.1 | Thale cress | plastid | 32.5 | 36.72 |
| VIT_05s0020g03510.t01 | Wine grape | plastid | 29.5 | 35.12 |
| GSMUA_Achr3P05390_001 | Banana | mitochondrion | 32.0 | 34.97 |
| Os08t0399050-00 | Rice | extracellular, plasma membrane | 45.5 | 30.95 |
Protein Annotations
| EnsemblPlants:Os04t0306750-01 | EnsemblPlantsGene:Os04g0306750 | PANTHER:PTHR37240 | ProteinID:BAS88490.1 | SEG:seg | UniParc:UPI000393A544 |
| UniProt:A0A0P0W8V9 | MapMan:23.1.5.3 | : | : | : | : |
Description
Similar to OSIGBa0096F13.8 protein. (Os04t0306750-01)
Coordinates
chr4:-:13818100..13820521
Molecular Weight (calculated)
20238.8 Da
IEP (calculated)
10.302
GRAVY (calculated)
-0.405
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: RPRRPPPPPP PHPPPASSHP SRRRRTPPPT ATRASFSTLR PPAISLSLSR SAAGCRGRLA RAASKSKGAG AGAAEDKKGQ EQEQQEASAT AVDGAEEAGE
101: VVAGGGGGGE KSPEAVAAEL KEVLRARKEA EAAAGGGGWW AGAAQEMSEI EWPAPGKVVG TTGVVLGVIA GSTAALLSVN ALLAELSDRV FAGRGLQDFF
101: VVAGGGGGGE KSPEAVAAEL KEVLRARKEA EAAAGGGGWW AGAAQEMSEI EWPAPGKVVG TTGVVLGVIA GSTAALLSVN ALLAELSDRV FAGRGLQDFF
001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
Arabidopsis Description
SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.