Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 10
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g04460.t01 | |
| VIT_11s0065g00940.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14870.1 | VIT_11s0065g00940.t01 | AT2G18710.1 | 10207046 |
| AT4G14870.1 | VIT_11s0065g00940.t01 | AT2G18710.1 | 15988575 |
| AT4G14870.1 | VIT_06s0004g04460.t01 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082126 | Potato | plastid | 51.19 | 48.04 |
| KRH77853 | Soybean | plastid | 41.67 | 45.16 |
| Bra036909.1-P | Field mustard | plastid | 43.45 | 42.2 |
| CDY29777 | Canola | plastid | 43.45 | 42.2 |
| AT4G14870.1 | Thale cress | plastid | 42.26 | 40.11 |
| TraesCS2A01G272500.1 | Wheat | plastid | 38.69 | 37.79 |
| TraesCS2B01G290700.1 | Wheat | plastid | 38.1 | 37.21 |
| Zm00001d045144_P001 | Maize | plastid | 36.9 | 33.7 |
| GSMUA_Achr3P05390_001 | Banana | mitochondrion | 36.31 | 33.33 |
| EER87959 | Sorghum | plastid | 35.71 | 32.61 |
| TraesCS2D01G271800.1 | Wheat | plastid | 39.88 | 32.37 |
| Os04t0306750-01 | Rice | mitochondrion, nucleus, plastid | 35.12 | 29.5 |
| Os08t0399050-00 | Rice | extracellular, plasma membrane | 28.57 | 16.33 |
Protein Annotations
| Gene3D:1.20.5.1030 | EntrezGene:104879253 | MapMan:23.1.5.3 | ProteinID:CCB50428 | ProteinID:CCB50428.1 | UniProt:F6HDQ7 |
| EMBL:FN595749 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | InterPro:IPR038379 | PANTHER:PTHR37240 |
| InterPro:SecE_sf | TMHMM:TMhelix | UniParc:UPI00015C77A1 | ArrayExpress:VIT_05s0020g03510 | EnsemblPlantsGene:VIT_05s0020g03510 | EnsemblPlants:VIT_05s0020g03510.t01 |
| unigene:Vvi.3008 | RefSeq:XP_010649905.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:-:5277293..5277996
Molecular Weight (calculated)
18069.4 Da
IEP (calculated)
5.735
GRAVY (calculated)
-0.201
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MALHLSSMQF PVSSSSPSTR LGKITSQLKT SAQIRARAAV ISHSVFHRRT ISTNAIEQGR QDGPSDEPEA VESPPAEPNT AKLSELGSEI KKTMKEREET
101: GKEADFWSGV AEEIREIEWP AFGKVLGTTW VVLGVIAGSS VALLTVNAVL AELSDRVFAG KGVQDFFG
101: GKEADFWSGV AEEIREIEWP AFGKVLGTTW VVLGVIAGSS VALLTVNAVL AELSDRVFAG KGVQDFFG
001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
Arabidopsis Description
SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.