CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77209
CDY13013
CDY31733
CDY49314

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14870.1	CDY13013	AT2G18710.1	10207046
AT4G14870.1	CDY49314	AT2G18710.1	10207046
AT4G14870.1	CDY13013	AT2G18710.1	15988575
AT4G14870.1	CDY49314	AT2G18710.1	15988575
AT4G14870.1	CDX77209	AT2G28800.1	15988575
AT4G14870.1	CDY31733	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036909.1-P	Field mustard	plastid	100.0	100.0
AT4G14870.1	Thale cress	plastid	75.14	73.45
KRH77853	Soybean	plastid	41.04	45.81
VIT_05s0020g03510.t01	Wine grape	plastid	42.2	43.45
PGSC0003DMT400082126	Potato	plastid	40.46	39.11
EER87959	Sorghum	plastid	41.04	38.59
TraesCS2B01G290700.1	Wheat	plastid	37.57	37.79
Zm00001d045144_P001	Maize	plastid	39.88	37.5
TraesCS2A01G272500.1	Wheat	plastid	36.99	37.21
GSMUA_Achr3P05390_001	Banana	mitochondrion	35.84	33.88
Os04t0306750-01	Rice	mitochondrion, nucleus, plastid	38.15	33.0
TraesCS2D01G271800.1	Wheat	plastid	35.84	29.95
Os08t0399050-00	Rice	extracellular, plasma membrane	30.06	17.69

Protein Annotations

Gene3D:1.20.5.1030	MapMan:23.1.5.3	GO:A0A078GX53	UniProt:A0A078GX53	EnsemblPlants:CDY29777	ProteinID:CDY29777
ProteinID:CDY29777.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006605	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009306	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015450	GO:GO:0016020	GO:GO:0016021	GO:GO:0071806	EnsemblPlantsGene:GSBRNA2T00043642001	InterPro:IPR038379
HAMAP:MF_00422	PFAM:PF00584	PANTHER:PTHR37240	InterPro:SecE	InterPro:SecE_bac	InterPro:SecE_sf
TIGRFAMs:TIGR00964	TMHMM:TMhelix	InterPro:Translocase_SecE/Sec61-g	UniParc:UPI0002545001	SEG:seg	:

Description

BnaA01g18890DPreprotein translocase subunit SECE1 [Source:Projected from Arabidopsis thaliana (AT4G14870) UniProtKB/Swiss-Prot;Acc:O23342]

Coordinates

chrLK032243:+:467626..468147

Molecular Weight (calculated)

18599.2 Da

IEP (calculated)

4.587

GRAVY (calculated)

-0.114

Length

173 amino acids

Sequence
(BLAST)

001: MSLTAQFSPP VTGINIRLRK TASLPSTLSP FHTEIRTPAM ICVRKSPYLV AKAIEQSRDT AGSESEQEAT PSPGESGKGE KEVEISELGA EIKAAMEQRK
101: AAEEEEGKNE FLSGVAEEVR EIEWPAFQKV VGTTGVVLGV IAGSSVVLLT VNFLLAELSD RVFIGKGVQD FFS

Best Arabidopsis Sequence Match ( AT4G14870.1 )
(BLAST)

001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS

Arabidopsis Description

SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.