Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001063 | |
| PGSC0003DMT400070672 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14870.1 | PGSC0003DMT400070672 | AT2G18710.1 | 10207046 |
| AT4G14870.1 | PGSC0003DMT400070672 | AT2G18710.1 | 15988575 |
| AT4G14870.1 | PGSC0003DMT400001063 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0020g03510.t01 | Wine grape | plastid | 48.04 | 51.19 |
| KRH77853 | Soybean | plastid | 41.34 | 47.74 |
| AT4G14870.1 | Thale cress | plastid | 40.78 | 41.24 |
| Bra036909.1-P | Field mustard | plastid | 39.11 | 40.46 |
| CDY29777 | Canola | plastid | 39.11 | 40.46 |
| Zm00001d045144_P001 | Maize | plastid | 38.55 | 37.5 |
| TraesCS2A01G272500.1 | Wheat | plastid | 35.75 | 37.21 |
| TraesCS2B01G290700.1 | Wheat | plastid | 35.75 | 37.21 |
| EER87959 | Sorghum | plastid | 37.99 | 36.96 |
| GSMUA_Achr3P05390_001 | Banana | mitochondrion | 36.31 | 35.52 |
| Os04t0306750-01 | Rice | mitochondrion, nucleus, plastid | 37.43 | 33.5 |
| TraesCS2D01G271800.1 | Wheat | plastid | 37.99 | 32.85 |
| Os08t0399050-00 | Rice | extracellular, plasma membrane | 29.05 | 17.69 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400082126 | EnsemblPlantsGene:PGSC0003DMG400032277 | EntrezGene:102606028 | Gene3D:1.20.5.1030 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0016020 | InterPro:IPR038379 | InterPro:SecE_sf | PANTHER:PTHR37240 | PGSC:PGSC0003DMG400032277 | RefSeq:XP_006360788.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000296AFB0 | UniProt:M1D5P5 | MapMan:23.1.5.3 | : |
Description
Protein translocase [Source:PGSC_GENE;Acc:PGSC0003DMG400032277]
Coordinates
chr9:-:53727669..53728555
Molecular Weight (calculated)
19232.6 Da
IEP (calculated)
4.717
GRAVY (calculated)
-0.279
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHPLSFSQS PLPLPSSSSK FILHSTTFSI KPTPILPHLK TPTIFTSISK KPNSFTIRRA AQDSNSNSSS SETEQNPPPE TETEAGDQGD GGDEVLSDVG
101: SELKKLMKER EQKEPDFWSG VAEEIREIEW PAFGKVLSTT GVVIGVIAGS SVVLLTVNAV LAELSDRVFA GKGVQDFFG
101: SELKKLMKER EQKEPDFWSG VAEEIREIEW PAFGKVLSTT GVVIGVIAGS SVVLLTVNAV LAELSDRVFA GKGVQDFFG
001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
Arabidopsis Description
SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.