Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- plastid 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0151200-01 | |
| Os08t0254500-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14870.1 | Os08t0254500-02 | AT2G18710.1 | 10207046 |
| AT4G14870.1 | Os08t0254500-02 | AT2G18710.1 | 15988575 |
| AT4G14870.1 | Os01t0151200-01 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0306750-01 | Rice | mitochondrion, nucleus, plastid | 30.95 | 45.5 |
| EER87959 | Sorghum | plastid | 27.55 | 44.02 |
| Zm00001d045144_P001 | Maize | plastid | 27.21 | 43.48 |
| TraesCS2B01G290700.1 | Wheat | plastid | 24.83 | 42.44 |
| TraesCS2A01G272500.1 | Wheat | plastid | 24.49 | 41.86 |
| TraesCS2D01G271800.1 | Wheat | plastid | 26.19 | 37.2 |
| KRH77853 | Soybean | plastid | 17.01 | 32.26 |
| GSMUA_Achr3P05390_001 | Banana | mitochondrion | 19.05 | 30.6 |
| Bra036909.1-P | Field mustard | plastid | 17.69 | 30.06 |
| CDY29777 | Canola | plastid | 17.69 | 30.06 |
| PGSC0003DMT400082126 | Potato | plastid | 17.69 | 29.05 |
| VIT_05s0020g03510.t01 | Wine grape | plastid | 16.33 | 28.57 |
| AT4G14870.1 | Thale cress | plastid | 17.01 | 28.25 |
Protein Annotations
| EnsemblPlants:Os08t0399050-00 | EnsemblPlantsGene:Os08g0399050 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | PANTHER:PTHR37240 | ProteinID:BAT05328.1 |
| SEG:seg | UniParc:UPI0003939A78 | UniProt:A0A0P0XFI7 | MapMan:23.1.5.3 | : | : |
Description
Similar to OSIGBa0096F13.8 protein. (Os08t0399050-00)
Coordinates
chr8:+:19033700..19034584
Molecular Weight (calculated)
30512.0 Da
IEP (calculated)
10.849
GRAVY (calculated)
-0.167
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MALKFKIYVG PFVIHTKIIV GPADMWVPRV ILSLSLLPPP SPPFSISPSF SLCVGSGVRI GGGDGLDPEL RMAVADGPLD PSNREAMATT PPASSQPPPP
101: LPRALPSPPS TLPRSPYPSP APPPPAAAAA SPSRLQVQGR KSGGEQEGAR AGAAGGVHDG GGRRRGGREG GGGEKSPETV AAELKEAETA AISSGWWVGV
201: AQEMSKIEWP VPGKVVGTTG VVLGVIAGST AALLSVNALL AELSDRTAAR APTCRRLMSR GEREIRERGG KRRVVRERMT CRNHMSVGPT IIFV
101: LPRALPSPPS TLPRSPYPSP APPPPAAAAA SPSRLQVQGR KSGGEQEGAR AGAAGGVHDG GGRRRGGREG GGGEKSPETV AAELKEAETA AISSGWWVGV
201: AQEMSKIEWP VPGKVVGTTG VVLGVIAGST AALLSVNALL AELSDRTAAR APTCRRLMSR GEREIRERGG KRRVVRERMT CRNHMSVGPT IIFV
001: MSLTAQFSPP VTGITRSLRD TKPSLSNLRV FPVYTEIRTM TTSNLRKSAC FVAKAIEQRR DTAGSESESE ATPSPAEESG SGEDKEVEIS AIGAEIKAAM
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
101: EQRKTAEEEK GKNEFLSGVA EEVKEIEWPA FQKVLGTTGV VLGVIAGSSV VLLTVNFLLA ELSDRVFIGR GVQDFFS
Arabidopsis Description
SECE1SECE1 [Source:UniProtKB/TrEMBL;Acc:A0A178UZ24]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.