Factsheet for VIT_06s0004g04460.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0396g00010.t01
VIT_00s0904g00010.t01
VIT_01s0010g01220.t01
VIT_01s0011g03010.t01
VIT_02s0025g04710.t01
VIT_05s0020g03510.t01
VIT_06s0004g04460.t01
VIT_06s0004g05180.t01
VIT_06s0004g05230.t01
VIT_06s0004g06170.t01
VIT_08s0007g00840.t01
VIT_08s0007g02190.t01
VIT_08s0058g01080.t01
VIT_10s0003g04310.t01
VIT_11s0065g00940.t01
VIT_12s0055g00080.t01
VIT_13s0019g02050.t01
VIT_13s0074g00230.t01
VIT_15s0046g01470.t01
VIT_15s0048g02080.t01
VIT_15s0048g02500.t01
VIT_16s0050g02240.t01
VIT_17s0000g04490.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28800.1	VIT_01s0011g03010.t01	AT1G68830.1	22616989
AT2G28800.1	VIT_11s0065g00940.t01	AT2G18710.1	12217076
AT2G28800.1	VIT_11s0065g00940.t01	AT2G18710.1	15988575
AT2G28800.1	VIT_06s0004g04460.t01	AT2G28800.1	15988575
AT2G28800.1	VIT_06s0004g05180.t01	AT2G39730.1	22616989
AT2G28800.1	VIT_08s0007g00840.t01	AT2G39730.1	22616989
AT2G28800.1	VIT_13s0019g02050.t01	AT2G39730.1	22616989
AT2G28800.1	VIT_15s0048g02080.t01	AT2G45770.1	14517205
AT2G28800.1	VIT_15s0048g02500.t01	AT2G46820.1	22616989
AT2G28800.1	VIT_01s0010g01220.t01	AT3G19900.1	22616989
AT2G28800.1	VIT_06s0004g05230.t01	AT3G46780.1	22616989
AT2G28800.1	VIT_06s0004g06170.t01	AT3G47070.1	22616989
AT2G28800.1	VIT_13s0074g00230.t01	AT3G52230.1	22616989
AT2G28800.1	VIT_15s0046g01470.t01	AT4G01150.1	22616989
AT2G28800.1	VIT_16s0050g02240.t01	AT4G01150.1	22616989
AT2G28800.1	VIT_00s0904g00010.t01	AT4G05180.1	22616989
AT2G28800.1	VIT_05s0020g03510.t01	AT4G14870.1	15988575
AT2G28800.1	VIT_02s0025g04710.t01	AT4G22890.1	22616989
AT2G28800.1	VIT_08s0007g02190.t01	AT5G01530.1	22616989
AT2G28800.1	VIT_17s0000g04490.t01	AT5G23060.1	22616989
AT2G28800.1	VIT_08s0058g01080.t01	ATCG00020.1	15988575
AT2G28800.1	VIT_08s0058g01080.t01	ATCG00020.1	22616989
AT2G28800.1	VIT_10s0003g04310.t01	ATCG00140.1	15988575
AT2G28800.1	VIT_12s0055g00080.t01	ATCG00270.1	15988575
AT2G28800.1	VIT_12s0055g00080.t01	ATCG00270.1	22616989
AT2G28800.1	VIT_00s0396g00010.t01	ATCG00280.1	15988575
AT2G28800.1	VIT_00s0396g00010.t01	ATCG00280.1	22616989

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24811	Soybean	plastid	79.34	80.22
KRH29812	Soybean	plastid	78.68	79.56
Solyc11g066110.1.1	Tomato	plastid	77.58	78.97
PGSC0003DMT400001063	Potato	plastid	77.14	78.35
CDY31733	Canola	plastid	72.53	74.32
Bra035669.1-P	Field mustard	plastid	72.75	74.05
CDX77209	Canola	plastid	70.77	72.52
GSMUA_Achr9P03990_001	Banana	mitochondrion, plastid	68.35	70.05
Os01t0151200-01	Rice	plasma membrane	70.55	69.93
HORVU3Hr1G013690.6	Barley	mitochondrion	63.74	69.54
Zm00001d039852_P001	Maize	plastid	69.45	69.45
AT2G28800.1	Thale cress	plastid	69.01	67.97
KXG31875	Sorghum	plastid	67.47	67.47
Zm00001d008625_P001	Maize	mitochondrion	68.79	67.31
TraesCS3B01G089800.1	Wheat	plastid	65.93	66.82
TraesCS3D01G075800.1	Wheat	plastid	65.93	66.67
TraesCS3A01G075700.1	Wheat	plastid	65.49	66.37
GSMUA_Achr5P28630_001	Banana	cytosol, nucleus, plasma membrane	69.01	44.86
VIT_01s0137g00220.t01	Wine grape	plastid	50.77	42.86

Protein Annotations

EntrezGene:100260431	wikigene:100260431	MapMan:23.1.7.5	ProteinID:CCB43586	ProteinID:CCB43586.1	UniProt:F6GV27
EMBL:FN594951	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0010027
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0019904	GO:GO:0032977
GO:GO:0032991	GO:GO:0045038	GO:GO:0051205	GO:GO:0070208	GO:GO:0072598	GO:GO:0090342
EntrezGene:LOC100260431	wikigene:LOC100260431	InterPro:Membr_insert_YidC/Oxa1_C	PFAM:PF02096	PANTHER:PTHR12428	PANTHER:PTHR12428:SF19
TIGR:TC58231	TIGRFAMs:TIGR03592	TMHMM:TMhelix	UniParc:UPI00015C76F3	ArrayExpress:VIT_06s0004g04460	EnsemblPlantsGene:VIT_06s0004g04460
EnsemblPlants:VIT_06s0004g04460.t01	unigene:Vvi.7379	RefSeq:XP_002284077	RefSeq:XP_002284077.1	InterPro:YidC/ALB3/OXA1/COX18	SEG:seg

Description

No Description!

Coordinates

chr6:-:5407544..5415216

Molecular Weight (calculated)

49354.4 Da

IEP (calculated)

9.724

GRAVY (calculated)

-0.122

Length

455 amino acids

Sequence
(BLAST)

001: MARTLISSPP FIGKPLPSLS SRHGLLHSLP HRRLISTRVK FSLHDLPPIH SLDSSSIDFA GIVSRAESLL YTLADAAVSA DPAAAGPASG TADAAVQKNG
101: GWFGFISEGM EVVLKVLEDG LTAVHVPYAY GFAIILLTVI VKIATYPLTK KQVESTLAMQ NLQPKIKAIQ ERYKGNQERI QLETSRLYKQ AGVNPLAGCF
201: PTLATIPVWI GLYQALSNVA NEGLLTEGFF WIPSLGGPTT IAARQSGSGI SWLIPFVDGH PPLGWQDTAA YLVLPVLLVI SQYVSMELMK PPQTDDPSQK
301: NTLLVFKFLP LMIGYFSLSV PSGLSIYWFT NNVLSTAQQV WLRKLGGAKP VVNEDASGII TAGRAKRSAS QPARAGDRFR QLKEEEKKKK ISKALPAEEI
401: QALASESDSD EGSDEETKDK GDDVLEEAYV SSGSKQVPQY AGPRRSKRSK RKRAG

Best Arabidopsis Sequence Match ( AT2G28800.1 )
(BLAST)

001: MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV

Arabidopsis Description

ALB3ALB3 [Source:UniProtKB/TrEMBL;Acc:A0A178VUV3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.