Factsheet for VIT_01s0137g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97503	Soybean	plastid	57.7	58.24
AT1G24490.1	Thale cress	plastid	53.43	57.72
Bra032799.1-P	Field mustard	plastid	51.58	56.73
CDX84950	Canola	plastid	51.58	56.73
CDY27589	Canola	plastid	51.58	56.73
KRH31380	Soybean	plastid	56.77	56.35
PGSC0003DMT400027904	Potato	plastid	55.29	56.33
CDY51594	Canola	plastid	51.76	56.02
Solyc05g014050.2.1	Tomato	plastid	55.1	55.93
CDY03882	Canola	plastid	51.39	55.73
Bra012507.1-P	Field mustard	plastid	51.39	55.62
KXG37151	Sorghum	plastid	50.28	53.88
Zm00001d012861_P001	Maize	plastid	49.35	53.52
GSMUA_Achr5P25520_001	Banana	plastid	53.25	53.35
VIT_06s0004g04460.t01	Wine grape	plastid	42.86	50.77
Os03t0844700-01	Rice	golgi, plastid	30.61	50.46
TraesCS4A01G341100.1	Wheat	plastid	47.87	49.71
TraesCS5D01G531600.2	Wheat	plastid	47.68	49.61
TraesCS5B01G533400.1	Wheat	plastid	47.12	49.51
HORVU5Hr1G120570.1	Barley	cytosol	46.75	48.28
Bra032798.1-P	Field mustard	nucleus	15.77	46.2
Bra040623.1-P	Field mustard	endoplasmic reticulum	14.47	40.84

Protein Annotations

EntrezGene:100256113	wikigene:100256113	MapMan:23.1.7.5	ProteinID:CBI16838	ProteinID:CBI16838.3	ncoils:Coil
UniProt:D7SMF9	EMBL:FN594954	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0032977	GO:GO:0051205	EntrezGene:LOC100256113	wikigene:LOC100256113	InterPro:Membr_insert_YidC/Oxa1_C	PFAM:PF02096
PANTHER:PTHR12428	PANTHER:PTHR12428:SF19	TIGRFAMs:TIGR03592	TMHMM:TMhelix	UniParc:UPI00019828B9	ArrayExpress:VIT_01s0137g00220
EnsemblPlantsGene:VIT_01s0137g00220	EnsemblPlants:VIT_01s0137g00220.t01	unigene:Vvi.520	RefSeq:XP_002282031	RefSeq:XP_002282031.1	InterPro:YidC/ALB3/OXA1/COX18
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:6701748..6712864

Molecular Weight (calculated)

60057.3 Da

IEP (calculated)

6.213

GRAVY (calculated)

-0.398

Length

539 amino acids

Sequence
(BLAST)

001: MSTFFAFHTS PLHLSPFPHR TQIRTPILHP SHFPGLPNRR SLGVARFGFR PFHSDGADAV IGDLFGRVET LLYTIADAAV SASDGKQSGD WLSGITNYME
101: TVLKVLKGGL STLHVPYAYG FAIILLTVLV KAATFPLTKK QVESAMAMRS LQPQIKAIQQ RYAGDQERIQ LETARLYKLA GINPLAGCLP TLATIPVWIG
201: LYRALSNVAD EGLLTEGFFW IPSLSGPTTI AARQNGSGIS WLFPFVDGHP PLGWSDTLAY LVLPMLLIVS QYISVQIMQS SQSNDPSLKT SQALTKFLPL
301: MIGYFALSVP SGLSLYWFTN NILSTAQQVW LQKLGGAQIP VKQFSDDIEK EELSQIQKPV FEINSTKKEP KQTEKLTSEG LRPGERFKQI KEQEARRRQQ
401: REEEKTKAEE AAANRIPTTN GGYKNEANST KREYRTGGDL VDGGNDSFQS LTTTHNSSNI EVVVNDELSN EDSKDEQKMY VTRTESSENS VNYEVDVRDE
501: QHINGKLEKE VIEVCTDNKP SGEETLQPRR EQPTEREEV

Best Arabidopsis Sequence Match ( AT1G24490.1 )
(BLAST)

001: MSSTISLKPT HLILSSFSTG KVLQFRRSRF SHTPSSSSSR YRTLVAQLGF RPDSFDFIKD HAENLLYTIA DAAVSSSETF ESVAGTTTKT TQSNDWFSGI
101: ANYMETILKV LKDGLSTVHV PYSYGFAIIL LTVLVKAATF PLTKKQVESA MAMKSLTPQI KAIQERYAGD QEKIQLETAR LYKLAGINPL AGCLPTLATI
201: PVWIGLYRAL SNVADEGLLT EGFFWIPSLA GPTTVAARQN GSGISWLFPF IEGHPPLGWP DTLAYLVLPL LLVFSQYLSI QIMQSSQSND PAMKSSQAVT
301: KLLPLMIGYF ALSVPSGLSL YWLTNNILST AQQVWLQKYG GAKNPVEKFT NLVTKEDKTQ QIEKSFSEPL VQKSVSELKI PREKGGEKVT PECPKPGERF
401: RLLKEQEAKR RREKEERQKA EAALSNQNTD KAHEQDEKSD TAIVAEDDKK TELSAVDETS DGTVAVNGKP SIQKDETTNG TFGIGHDTEQ QHSHETEKR

Arabidopsis Description

ALB4ALBINO3-like protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.