Factsheet for Solyc05g014050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027904	Potato	plastid	89.08	89.41
Bra012507.1-P	Field mustard	plastid	51.98	55.42
CDY51594	Canola	plastid	51.79	55.22
VIT_01s0137g00220.t01	Wine grape	plastid	55.93	55.1
Bra032799.1-P	Field mustard	plastid	50.85	55.1
CDY27589	Canola	plastid	50.85	55.1
CDX84950	Canola	plastid	50.47	54.69
CDY03882	Canola	plastid	51.04	54.53
KXG37151	Sorghum	plastid	50.85	53.68
KRG97503	Soybean	plastid	53.86	53.56
AT1G24490.1	Thale cress	plastid	50.09	53.31
KRH31380	Soybean	plastid	54.24	53.04
Zm00001d012861_P001	Maize	plastid	49.53	52.92
GSMUA_Achr5P25520_001	Banana	plastid	53.11	52.42
Solyc11g066110.1.1	Tomato	plastid	43.31	51.45
TraesCS5B01G533400.1	Wheat	plastid	48.02	49.71
Os03t0844700-01	Rice	golgi, plastid	30.13	48.93
TraesCS5D01G531600.2	Wheat	plastid	47.65	48.84
TraesCS4A01G341100.1	Wheat	plastid	46.7	47.78
HORVU5Hr1G120570.1	Barley	cytosol	46.7	47.51
Bra032798.1-P	Field mustard	nucleus	15.44	44.57
Bra040623.1-P	Field mustard	endoplasmic reticulum	14.31	39.79

Protein Annotations

MapMan:23.1.7.5	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0032977	GO:GO:0051205	GO:GO:0072598	UniProt:K4BYC5
InterPro:Membr_insert_YidC/Oxa1_C	PFAM:PF02096	PANTHER:PTHR12428	PANTHER:PTHR12428:SF19	EnsemblPlantsGene:Solyc05g014050.2	EnsemblPlants:Solyc05g014050.2.1
TIGRFAMs:TIGR03592	TMHMM:TMhelix	UniParc:UPI00027662AE	InterPro:YidC/ALB3/OXA1/COX18	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:7616440..7621671

Molecular Weight (calculated)

58505.4 Da

IEP (calculated)

7.084

GRAVY (calculated)

-0.377

Length

531 amino acids

Sequence
(BLAST)

001: MATFFPSLGP NSILSPFVDR TRTLNPVFQR THFGNLPLNK PFSRGMLGVA RFGLGQDPFP DPETAELFFK DLLTRTEGFL YTVADAAVSG SVDTVVDTTG
101: SVKQNSDWLS GITNGMETVL KVLKDGLSTL HVPYSYGFAI ILLTILVKAA TFPLTKKQVE SSLAIRSMAP QIKAIQERYA GDQERIQLET ARLYKLAGVN
201: PLAGCLPTLA TIPIWIGLYR ALSNVANEGL LTEGFFWIPS LAGPTTVAAR QTGSGTSWLF PFVDGHPPLG WSDTFAYLVL PVLLVVSQYI SIQIMQPSQQ
301: SDDPNVKNSQ AITKFLPLML GYFSLSVPSG LSLYWLTNNI LSTGQQVWLQ KLGGAKVPTL KLSDDTPKKE QPQIQKLVSE ATIAKKKDAN PTSDKPRQGE
401: RFKQLKEQEA RKRQQREEEK RRAEVAANYR KEDKSVGLET RNEIDSINGD SASLSRNAST SENYRIVNGD STSSEVKADE RSQTGKISDD HNDGEDQHVS
501: DIRKKGDTVT STTRATDDKL PLEVAQEDRS E

Best Arabidopsis Sequence Match ( AT1G24490.1 )
(BLAST)

001: MSSTISLKPT HLILSSFSTG KVLQFRRSRF SHTPSSSSSR YRTLVAQLGF RPDSFDFIKD HAENLLYTIA DAAVSSSETF ESVAGTTTKT TQSNDWFSGI
101: ANYMETILKV LKDGLSTVHV PYSYGFAIIL LTVLVKAATF PLTKKQVESA MAMKSLTPQI KAIQERYAGD QEKIQLETAR LYKLAGINPL AGCLPTLATI
201: PVWIGLYRAL SNVADEGLLT EGFFWIPSLA GPTTVAARQN GSGISWLFPF IEGHPPLGWP DTLAYLVLPL LLVFSQYLSI QIMQSSQSND PAMKSSQAVT
301: KLLPLMIGYF ALSVPSGLSL YWLTNNILST AQQVWLQKYG GAKNPVEKFT NLVTKEDKTQ QIEKSFSEPL VQKSVSELKI PREKGGEKVT PECPKPGERF
401: RLLKEQEAKR RREKEERQKA EAALSNQNTD KAHEQDEKSD TAIVAEDDKK TELSAVDETS DGTVAVNGKP SIQKDETTNG TFGIGHDTEQ QHSHETEKR

Arabidopsis Description

ALB4ALBINO3-like protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.