Factsheet for PGSC0003DMT400027904

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014050.2.1	Tomato	plastid	89.41	89.08
Bra012507.1-P	Field mustard	plastid	52.55	55.82
CDY51594	Canola	plastid	52.36	55.62
VIT_01s0137g00220.t01	Wine grape	plastid	56.33	55.29
CDY03882	Canola	plastid	51.61	54.93
Bra032799.1-P	Field mustard	plastid	50.47	54.49
CDY27589	Canola	plastid	50.47	54.49
CDX84950	Canola	plastid	50.09	54.08
KXG37151	Sorghum	plastid	50.85	53.48
AT1G24490.1	Thale cress	plastid	50.28	53.31
KRH31380	Soybean	plastid	54.63	53.22
GSMUA_Achr5P25520_001	Banana	plastid	54.06	53.16
KRG97503	Soybean	plastid	53.31	52.81
Zm00001d012861_P001	Maize	plastid	49.34	52.52
PGSC0003DMT400001063	Potato	plastid	43.29	51.12
TraesCS5B01G533400.1	Wheat	plastid	48.39	49.9
TraesCS5D01G531600.2	Wheat	plastid	48.02	49.03
TraesCS4A01G341100.1	Wheat	plastid	47.64	48.55
Os03t0844700-01	Rice	golgi, plastid	29.87	48.32
HORVU5Hr1G120570.1	Barley	cytosol	46.69	47.32
Bra032798.1-P	Field mustard	nucleus	15.31	44.02
Bra040623.1-P	Field mustard	endoplasmic reticulum	13.8	38.22

Protein Annotations

EntrezGene:102597369	MapMan:23.1.7.5	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009658	GO:GO:0009987	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0032977	GO:GO:0051205	GO:GO:0072598
UniProt:M1AQC2	InterPro:Membr_insert_YidC/Oxa1_C	PFAM:PF02096	EnsemblPlantsGene:PGSC0003DMG400010740	PGSC:PGSC0003DMG400010740	EnsemblPlants:PGSC0003DMT400027904
PANTHER:PTHR12428	PANTHER:PTHR12428:SF19	TIGRFAMs:TIGR03592	TMHMM:TMhelix	UniParc:UPI000294B702	RefSeq:XP_006341780.1
InterPro:YidC/ALB3/OXA1/COX18	SEG:seg	:	:	:	:

Description

ALBINO3 1, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400010740]

Coordinates

chr5:-:11279513..11286927

Molecular Weight (calculated)

58483.4 Da

IEP (calculated)

6.977

GRAVY (calculated)

-0.371

Length

529 amino acids

Sequence
(BLAST)

001: MATLFPSLGP NSILSPFVDR TKTLNPVFHR THFGNLPLNK PFSRGMLGVA RFGLGQDPFP DPETAELLFK DLFTRAEGFL YTVADAAVSG SADTVVDTTE
101: SVKQNSDWLS GITNGMETVL KVLKDGLSTL HVPYSYGFAI ILLTILVKAA TFPLTKKQVE SSLAMRSMAP QIKAIQERYA GDQERIQLET ARLYKLAGVN
201: PLAGCLPTLA TIPIWIGLYR VLSNVANEGL LTEGFFWIPS LAGPTTVAAR QTGSGTSWLF PFVDGHPPLG WSDTFAYLVL PVLLVVSQYI SIQIMQPSQQ
301: SDDPNVKNSQ AITKFLPLML GYFSLSVPSG LSLYWLTNNI LSTGQQVWLQ KFGGAKVPTL KLSDDTPRKE QPQIQKLVSE ATIAKKKDGN LTSDKSRQGE
401: RFKQLKEQEA RKRQQREEEK RRAEVAVNRK EDKSVEIVTR NETDSTNGDS TSLSHNASTS ENYRVVNGDS ISSEVKEVER SQTGKISDDH SHVEDQHVSD
501: RMKKGETVTS TRATDNKLPL EDAQEDRSE

Best Arabidopsis Sequence Match ( AT1G24490.1 )
(BLAST)

001: MSSTISLKPT HLILSSFSTG KVLQFRRSRF SHTPSSSSSR YRTLVAQLGF RPDSFDFIKD HAENLLYTIA DAAVSSSETF ESVAGTTTKT TQSNDWFSGI
101: ANYMETILKV LKDGLSTVHV PYSYGFAIIL LTVLVKAATF PLTKKQVESA MAMKSLTPQI KAIQERYAGD QEKIQLETAR LYKLAGINPL AGCLPTLATI
201: PVWIGLYRAL SNVADEGLLT EGFFWIPSLA GPTTVAARQN GSGISWLFPF IEGHPPLGWP DTLAYLVLPL LLVFSQYLSI QIMQSSQSND PAMKSSQAVT
301: KLLPLMIGYF ALSVPSGLSL YWLTNNILST AQQVWLQKYG GAKNPVEKFT NLVTKEDKTQ QIEKSFSEPL VQKSVSELKI PREKGGEKVT PECPKPGERF
401: RLLKEQEAKR RREKEERQKA EAALSNQNTD KAHEQDEKSD TAIVAEDDKK TELSAVDETS DGTVAVNGKP SIQKDETTNG TFGIGHDTEQ QHSHETEKR

Arabidopsis Description

ALB4ALBINO3-like protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.