CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51594	Canola	plastid	92.35	92.17
CDX84950	Canola	plastid	80.28	81.43
CDY27589	Canola	plastid	79.48	80.61
AT1G24490.1	Thale cress	plastid	78.07	77.76
KRG97503	Soybean	plastid	59.56	55.43
CDX77209	Canola	plastid	47.08	52.7
KRH31380	Soybean	plastid	57.34	52.49
CDY31733	Canola	plastid	46.88	52.48
PGSC0003DMT400027904	Potato	plastid	54.93	51.61
VIT_01s0137g00220.t01	Wine grape	plastid	55.73	51.39
Solyc05g014050.2.1	Tomato	plastid	54.53	51.04
KXG37151	Sorghum	plastid	50.91	50.3
Zm00001d012861_P001	Maize	plastid	49.9	49.9
GSMUA_Achr5P25520_001	Banana	plastid	53.12	49.07
Os03t0844700-01	Rice	golgi, plastid	32.19	48.93
TraesCS5B01G533400.1	Wheat	plastid	49.3	47.76
TraesCS4A01G341100.1	Wheat	plastid	49.3	47.21
TraesCS5D01G531600.2	Wheat	plastid	49.09	47.1
HORVU5Hr1G120570.1	Barley	cytosol	47.69	45.4

Protein Annotations

EnsemblPlants:CDY03882	EnsemblPlantsGene:GSBRNA2T00117365001	GO:A0A078ES58	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	GO:GO:0032977	InterPro:Membr_insert_YidC/Oxa1_C	InterPro:YidC/ALB3/OXA1/COX18	ncoils:Coil
PANTHER:PTHR12428	PANTHER:PTHR12428:SF19	PFAM:PF02096	ProteinID:CDY03882	ProteinID:CDY03882.1	SEG:seg
TIGRFAMs:TIGR03592	TMHMM:TMhelix	UniParc:UPI0004EE9231	MapMan:23.1.7.5	:	:

Description

BnaC07g11070D

Coordinates

chrLK031947:-:569840..572858

Molecular Weight (calculated)

54206.8 Da

IEP (calculated)

8.562

GRAVY (calculated)

-0.222

Length

497 amino acids

Sequence
(BLAST)

001: MASSISLRPT SLILSSTFST GRVLHFRRSP FSRTPSSSSC RHRTLVAQFG LGPGSFPDPG FSLDLIKDHA ESLLYTIADA AVSSSETFES VSGTTTKQNS
101: DWFSGIANYM ETILKVLKDG LSTVNVPYSY GFAIILLTVL VKAATFPLTK KQVESAMAMK SLQPQIKAIQ ERYAGDQERI QLETARLYKL AGINPLAGCL
201: PTLATIPVWI GLYRALSNVA DEGLLTEGFF WIPSLAGPTT VAARQSGSGI SWLFPFIEGH PPLGWSDTLA YLVLPLLLIF TQYLSIQIMQ SSQGQSNDPA
301: MKSSQAVTKL LPLMIGYFSL SVPSGLSLYW LTNNILSTAQ QVWLQKYGGA KNPMEKLTNL VMKEDKTQKV EKSISEPLVQ KSVSELKIPK EKGGEKVTSE
401: GPKPGERFRL LKEQEAKRRR EKEEARQKAE AALSNQNIGS VQEQEEKSDT ADVAVGNNEK AKLSAVGETA DGSVAVNGKP SIHGVDHDTE QHHSHEA

Best Arabidopsis Sequence Match ( AT1G24490.1 )
(BLAST)

001: MSSTISLKPT HLILSSFSTG KVLQFRRSRF SHTPSSSSSR YRTLVAQLGF RPDSFDFIKD HAENLLYTIA DAAVSSSETF ESVAGTTTKT TQSNDWFSGI
101: ANYMETILKV LKDGLSTVHV PYSYGFAIIL LTVLVKAATF PLTKKQVESA MAMKSLTPQI KAIQERYAGD QEKIQLETAR LYKLAGINPL AGCLPTLATI
201: PVWIGLYRAL SNVADEGLLT EGFFWIPSLA GPTTVAARQN GSGISWLFPF IEGHPPLGWP DTLAYLVLPL LLVFSQYLSI QIMQSSQSND PAMKSSQAVT
301: KLLPLMIGYF ALSVPSGLSL YWLTNNILST AQQVWLQKYG GAKNPVEKFT NLVTKEDKTQ QIEKSFSEPL VQKSVSELKI PREKGGEKVT PECPKPGERF
401: RLLKEQEAKR RREKEERQKA EAALSNQNTD KAHEQDEKSD TAIVAEDDKK TELSAVDETS DGTVAVNGKP SIQKDETTNG TFGIGHDTEQ QHSHETEKR

Arabidopsis Description

ALB4ALBINO3-like protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FYL3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.