Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001063 | Potato | plastid | 99.33 | 99.11 |
| VIT_06s0004g04460.t01 | Wine grape | plastid | 78.97 | 77.58 |
| KRH29812 | Soybean | plastid | 76.73 | 76.22 |
| KRH24811 | Soybean | plastid | 76.51 | 76.0 |
| CDY31733 | Canola | plastid | 72.26 | 72.75 |
| Bra035669.1-P | Field mustard | plastid | 72.48 | 72.48 |
| CDX77209 | Canola | plastid | 70.92 | 71.4 |
| HORVU3Hr1G013690.6 | Barley | mitochondrion | 65.1 | 69.78 |
| GSMUA_Achr9P03990_001 | Banana | mitochondrion, plastid | 69.13 | 69.59 |
| Os01t0151200-01 | Rice | plasma membrane | 71.36 | 69.5 |
| AT2G28800.1 | Thale cress | plastid | 70.69 | 68.4 |
| TraesCS3D01G075800.1 | Wheat | plastid | 67.56 | 67.11 |
| TraesCS3A01G075700.1 | Wheat | plastid | 67.34 | 67.04 |
| TraesCS3B01G089800.1 | Wheat | plastid | 67.34 | 67.04 |
| Zm00001d039852_P001 | Maize | plastid | 68.23 | 67.03 |
| KXG31875 | Sorghum | plastid | 67.79 | 66.59 |
| Zm00001d008625_P001 | Maize | mitochondrion | 68.9 | 66.24 |
| Solyc05g014050.2.1 | Tomato | plastid | 51.45 | 43.31 |
| GSMUA_Achr5P28630_001 | Banana | cytosol, nucleus, plasma membrane | 67.79 | 43.29 |
Protein Annotations
| MapMan:23.1.7.5 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 | GO:GO:0010027 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0019904 | GO:GO:0032977 |
| GO:GO:0032991 | GO:GO:0045038 | GO:GO:0051205 | GO:GO:0070208 | GO:GO:0072598 | GO:GO:0090342 |
| UniProt:K4D9M0 | InterPro:Membr_insert_YidC/Oxa1_C | PFAM:PF02096 | PANTHER:PTHR12428 | PANTHER:PTHR12428:SF19 | EnsemblPlantsGene:Solyc11g066110.1 |
| EnsemblPlants:Solyc11g066110.1.1 | TIGRFAMs:TIGR03592 | TMHMM:TMhelix | UniParc:UPI0002769CA8 | InterPro:YidC/ALB3/OXA1/COX18 | SEG:seg |
Description
Inner membrane protein ALBINO3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G28800) UniProtKB/Swiss-Prot;Acc:Q8LBP4]
Coordinates
chr11:+:51790791..51797669
Molecular Weight (calculated)
48941.8 Da
IEP (calculated)
9.744
GRAVY (calculated)
-0.160
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTLISSPS SFIGTPLPSL SRHVFHRRRL ISTRVKFSFH DLPPIHSLHS NFDFEAVVSR AEGLLYTLAD AAVAADPGVA PDVTAAGTAQ KSGGWFAFIS
101: DAMEVVLKVM KDGLQAVHVP YSYGFAIILL TLLVKAATFP LTKQQVESTL AMQNLQPKIK AIQQRYAGNQ ERIQLETSRL YKQAGVNPLA GCFPTLATIP
201: VWIGLYQALS NVANEGLLTE GFFWIPSLGG PTTIAARQSG SGVSWLFPFV DGHPPLGWHD TVAYLILPVL LIVSQYVSME IMKPPQTDDP SQKNTLLVFK
301: FLPLMIGYFS LSVPSGLTIY WFTNNVLTTA QQVWLRKLGG AKPAVSGDAG GIISAGRAKR TTSQPEQSGE RFRQLKEDEK KKKSTKALPT DKVELSASIS
401: DSEDEQDDDT KPKDEEVLEE AYASSSSKEV PNYSGPRKSK RSKRKRA
101: DAMEVVLKVM KDGLQAVHVP YSYGFAIILL TLLVKAATFP LTKQQVESTL AMQNLQPKIK AIQQRYAGNQ ERIQLETSRL YKQAGVNPLA GCFPTLATIP
201: VWIGLYQALS NVANEGLLTE GFFWIPSLGG PTTIAARQSG SGVSWLFPFV DGHPPLGWHD TVAYLILPVL LIVSQYVSME IMKPPQTDDP SQKNTLLVFK
301: FLPLMIGYFS LSVPSGLTIY WFTNNVLTTA QQVWLRKLGG AKPAVSGDAG GIISAGRAKR TTSQPEQSGE RFRQLKEDEK KKKSTKALPT DKVELSASIS
401: DSEDEQDDDT KPKDEEVLEE AYASSSSKEV PNYSGPRKSK RSKRKRA
001: MARVLVSSPS SFFGSPLIKP SSSLRHSGVG GGGTAQFLPY RSNNNKLFTT STTVRFSLNE IPPFHGLDSS VDIGAIFTRA ESLLYTIADA AVVGADSVVT
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
101: TDSSAVQKSG GWFGFISDAM ELVLKILKDG LSAVHVPYAY GFAIILLTII VKAATYPLTK QQVESTLAMQ NLQPKIKAIQ QRYAGNQERI QLETSRLYKQ
201: AGVNPLAGCL PTLATIPVWI GLYQALSNVA NEGLFTEGFF WIPSLGGPTS IAARQSGSGI SWLFPFVDGH PPLGWYDTVA YLVLPVLLIA SQYVSMEIMK
301: PPQTDDPAQK NTLLVFKFLP LMIGYFALSV PSGLSIYWLT NNVLSTAQQV YLRKLGGAKP NMDENASKII SAGRAKRSIA QPDDAGERFR QLKEQEKRSK
401: KNKAVAKDTV ELVEESQSES EEGSDDEEEE AREGALASST TSKPLPEVGQ RRSKRSKRKR TV
Arabidopsis Description
ALB3ALB3 [Source:UniProtKB/TrEMBL;Acc:A0A178VUV3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.