Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc11g066110.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | Solyc11g066110.1.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 61.76 | 51.85 |
| TraesCS1B01G239600.1 | Wheat | golgi, plasma membrane | 55.88 | 50.0 |
| Solyc09g059660.1.1 | Tomato | plastid | 58.82 | 49.38 |
| KRH57995 | Soybean | endoplasmic reticulum, extracellular | 58.82 | 48.19 |
| Solyc08g028860.1.1 | Tomato | endoplasmic reticulum, vacuole | 57.35 | 48.15 |
| Solyc12g062620.1.1 | Tomato | cytosol, peroxisome, plastid | 47.06 | 47.06 |
| Solyc10g044550.1.1 | Tomato | endoplasmic reticulum, extracellular | 55.88 | 46.91 |
| KRH55079 | Soybean | cytosol, plasma membrane, plastid | 44.12 | 46.88 |
| VIT_10s0003g04310.t01 | Wine grape | cytosol | 32.35 | 35.48 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 51.47 | 35.35 |
| Solyc12g035850.1.1 | Tomato | cytosol, endoplasmic reticulum | 36.76 | 25.25 |
Protein Annotations
| Gene3D:1.20.20.10 | MapMan:35.2 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_sf | InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 |
| GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 |
| GO:GO:0016787 | GO:GO:0033177 | GO:GO:0045263 | GO:GO:0046933 | InterPro:IPR038662 | UniProt:K4CCY4 |
| PFAM:PF00137 | PRINTS:PR00124 | PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 | SUPFAM:SSF81333 | EnsemblPlantsGene:Solyc07g021260.1 |
| EnsemblPlants:Solyc07g021260.1.1 | UniParc:UPI000276C7D7 | : | : | : | : |
Description
ATP synthase subunit c, chloroplastic [Source:Projected from Arabidopsis thaliana (ATCG00140) UniProtKB/Swiss-Prot;Acc:P56760]
Coordinates
chr7:-:16797253..16797665
Molecular Weight (calculated)
7145.7 Da
IEP (calculated)
5.619
GRAVY (calculated)
0.081
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MEEGKSRGLT NTLWLKRLDV GLASIGHGVG QGTVVGEALE SITRHPEAEG KISGTLLLSP AFMEALTI
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.