Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | KRH24811 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | KRH29812 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55079 | Soybean | cytosol, plasma membrane, plastid | 62.65 | 81.25 |
| TraesCS5D01G011200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 73.49 | 75.31 |
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| CAA33991 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| TraesCSU01G269000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| HORVU0Hr1G034610.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| HORVU0Hr1G037590.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| HORVU6Hr1G049160.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| TraesCS5D01G196700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| TraesCS1D01G180800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 74.07 |
| AGP50750 | Barley | plastid | 72.29 | 74.07 |
| TraesCS1D01G070600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 71.08 | 72.84 |
| TraesCSU01G271100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 71.08 | 72.84 |
| TraesCSU01G174300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 71.08 | 72.84 |
| Solyc09g059660.1.1 | Tomato | plastid | 69.88 | 71.6 |
| TraesCS5D01G220200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 69.88 | 71.6 |
| TraesCS5D01G459200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 69.88 | 71.6 |
| TraesCS6D01G021800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 69.88 | 71.6 |
| TraesCS7A01G363200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 69.88 | 71.6 |
| TraesCS1B01G239600.1 | Wheat | golgi, plasma membrane | 63.86 | 69.74 |
| TraesCS4D01G042700.1 | Wheat | vacuole | 67.47 | 69.14 |
| VIT_10s0003g04310.t01 | Wine grape | cytosol | 46.99 | 62.9 |
| CDY21188 | Canola | endoplasmic reticulum, extracellular, vacuole | 73.49 | 62.89 |
| KRG94790 | Soybean | endoplasmic reticulum, extracellular, vacuole | 51.81 | 60.56 |
| Solyc07g021260.1.1 | Tomato | cytosol | 48.19 | 58.82 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 60.24 | 50.51 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | UniProt:A0A0R0JZY7 | EMBL:ACUP02003184 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_DDCD_BS |
| InterPro:ATP_synth_F0_csu_sf | InterPro:ATP_synth_csu_bac/chlpt | InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf | EnsemblPlantsGene:GLYMA_05G099200 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006754 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0015992 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0033177 | GO:GO:0045263 | GO:GO:0046933 |
| InterPro:IPR038662 | EnsemblPlants:KRH57995 | ProteinID:KRH57995 | ProteinID:KRH57995.1 | HAMAP:MF_01396 | PFAM:PF00137 |
| PRINTS:PR00124 | ScanProsite:PS00605 | PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 | SUPFAM:SSF81333 | TIGRFAMs:TIGR01260 |
| TMHMM:TMhelix | UniParc:UPI0006EDA320 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:26287164..26288381
Molecular Weight (calculated)
8924.1 Da
IEP (calculated)
4.801
GRAVY (calculated)
0.800
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: ELSYFLPFLI LQVLKDYIFG PASIGPRVGQ GTTVGQAVEG IARQPEAEGK IRGTLLLSLA FMEALTIYGL VVVLALLFAN PFV
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.