Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G013690.6 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | HORVU3Hr1G013690.6 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AGP50750 | Barley | plastid | 100.0 | 100.0 |
| CAA33991 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| HORVU0Hr1G034610.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| HORVU0Hr1G037590.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 100.0 | 100.0 |
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 97.53 | 97.53 |
| TraesCS5D01G459200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 97.53 | 97.53 |
| TraesCS7A01G363200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 91.36 | 91.36 |
| Solyc10g044550.1.1 | Tomato | endoplasmic reticulum, extracellular | 87.65 | 87.65 |
| KRH55079 | Soybean | cytosol, plasma membrane, plastid | 66.67 | 84.38 |
| CDY21188 | Canola | endoplasmic reticulum, extracellular, vacuole | 97.53 | 81.44 |
| KRH57995 | Soybean | endoplasmic reticulum, extracellular | 74.07 | 72.29 |
| VIT_10s0003g04310.t01 | Wine grape | cytosol | 53.09 | 69.35 |
| CDY40490 | Canola | plastid | 92.59 | 60.98 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 74.07 | 60.61 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | EntrezGene:4525125 | ProteinID:AGP50750.1 | ProteinID:AMA20241.1 | InterPro:ATP_synth_F0_csu |
| InterPro:ATP_synth_F0_csu_DDCD_BS | InterPro:ATP_synth_F0_csu_sf | InterPro:ATP_synth_csu_bac/chlpt | InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006754 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 |
| GO:GO:0009579 | GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016787 | GO:GO:0033177 | GO:GO:0045263 | GO:GO:0046933 | EnsemblPlantsGene:HORVU6Hr1G049160 |
| EnsemblPlants:HORVU6Hr1G049160.1 | InterPro:IPR038662 | HAMAP:MF_01396 | PFAM:PF00137 | PRINTS:PR00124 | ScanProsite:PS00605 |
| PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 | UniProt:S4Z1W4 | SUPFAM:SSF81333 | TIGRFAMs:TIGR01260 | TMHMM:TMhelix |
| UniParc:UPI00000010B1 | RefSeq:YP_874648.1 | SEG:seg | : | : | : |
Description
ATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:S4Z1W4]
Coordinates
chrchr6H:+:299492425..299492671
Molecular Weight (calculated)
7975.0 Da
IEP (calculated)
4.628
GRAVY (calculated)
1.035
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MNPLIAAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.