Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | CDX77209 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | CDY31733 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 83.51 | 100.0 |
| CAA33991 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 81.44 | 97.53 |
| AGP50750 | Barley | plastid | 81.44 | 97.53 |
| HORVU0Hr1G034610.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 81.44 | 97.53 |
| HORVU0Hr1G037590.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 81.44 | 97.53 |
| HORVU6Hr1G049160.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 81.44 | 97.53 |
| TraesCS5D01G196700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.44 | 97.53 |
| TraesCS1D01G180800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.44 | 97.53 |
| TraesCSU01G271100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 80.41 | 96.3 |
| TraesCSU01G269000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 80.41 | 96.3 |
| TraesCS5D01G011200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 80.41 | 96.3 |
| TraesCS1D01G070600.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 79.38 | 95.06 |
| TraesCS5D01G459200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 79.38 | 95.06 |
| TraesCSU01G174300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 79.38 | 95.06 |
| TraesCS5D01G220200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 78.35 | 93.83 |
| TraesCS6D01G021800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 77.32 | 92.59 |
| TraesCS4D01G042700.1 | Wheat | vacuole | 76.29 | 91.36 |
| TraesCS7A01G363200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 75.26 | 90.12 |
| KRH55079 | Soybean | cytosol, plasma membrane, plastid | 55.67 | 84.38 |
| TraesCS1B01G239600.1 | Wheat | golgi, plasma membrane | 65.98 | 84.21 |
| KRH57995 | Soybean | endoplasmic reticulum, extracellular | 62.89 | 73.49 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 63.92 | 62.63 |
| CDY40490 | Canola | plastid | 79.38 | 62.6 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | GO:A0A078G8Z5 | UniProt:A0A078G8Z5 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_DDCD_BS |
| InterPro:ATP_synth_F0_csu_sf | InterPro:ATP_synth_csu_bac/chlpt | InterPro:ATPase_proteolipid_c-like_dom | EnsemblPlants:CDY21188 | ProteinID:CDY21188 | ProteinID:CDY21188.1 |
| InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006754 |
| GO:GO:0006810 | GO:GO:0006811 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008289 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016787 | GO:GO:0033177 | GO:GO:0045263 | GO:GO:0046933 | EnsemblPlantsGene:GSBRNA2T00015390001 | InterPro:IPR038662 |
| HAMAP:MF_01396 | PFAM:PF00137 | PRINTS:PR00124 | ScanProsite:PS00605 | PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 |
| SUPFAM:SSF81333 | TIGRFAMs:TIGR01260 | TMHMM:TMhelix | UniParc:UPI0004EDDB6E | SEG:seg | : |
Description
BnaA01g34190DATP synthase subunit c, chloroplastic [Source:Projected from Arabidopsis thaliana (ATCG00140) UniProtKB/Swiss-Prot;Acc:P56760]
Coordinates
chrLK032116:-:481503..481796
Molecular Weight (calculated)
9856.3 Da
IEP (calculated)
4.162
GRAVY (calculated)
1.103
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MIVSLTISLF WCEELIMNPL VSAASVIAAG LAVGLASIGP GVGQGTAAGQ AVEGIARQPE AEGKIRGTLL LSLAFMEALT IYGLVVALAL LFANPFV
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.