Subcellular Localization
min:
: max
Winner_takes_all: golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 4
- vacuole 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G075700.1 | |
| TraesCS3B01G089800.1 | |
| TraesCS3D01G075800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | TraesCS3A01G075700.1 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | TraesCS3B01G089800.1 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | TraesCS3D01G075800.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55079 | Soybean | cytosol, plasma membrane, plastid | 68.42 | 81.25 |
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 84.21 | 79.01 |
| TraesCS5B01G052700.1 | Wheat | plastid | 84.21 | 79.01 |
| TraesCS7B01G338100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 84.21 | 79.01 |
| TraesCS1B01G404900.1 | Wheat | endoplasmic reticulum, vacuole | 82.89 | 77.78 |
| TraesCS6B01G256800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.58 | 76.54 |
| TraesCS7B01G395900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.58 | 76.54 |
| Solyc09g059660.1.1 | Tomato | plastid | 78.95 | 74.07 |
| VIT_10s0003g04310.t01 | Wine grape | cytosol | 53.95 | 66.13 |
| CDY21188 | Canola | endoplasmic reticulum, extracellular, vacuole | 84.21 | 65.98 |
| KRH57995 | Soybean | endoplasmic reticulum, extracellular | 69.74 | 63.86 |
| Solyc07g021260.1.1 | Tomato | cytosol | 50.0 | 55.88 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 69.74 | 53.54 |
| CDY40490 | Canola | plastid | 78.95 | 48.78 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_DDCD_BS | InterPro:ATP_synth_F0_csu_sf | InterPro:ATP_synth_csu_bac/chlpt |
| InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009534 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009987 |
| GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0033177 | GO:GO:0045263 |
| InterPro:IPR038662 | HAMAP:MF_01396 | PFAM:PF00137 | PRINTS:PR00124 | ScanProsite:PS00605 | PANTHER:PTHR10031 |
| PANTHER:PTHR10031:SF6 | SUPFAM:SSF81333 | SignalP:SignalP-TM | TIGRFAMs:TIGR01260 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS1B01G239600 |
| EnsemblPlants:TraesCS1B01G239600.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:427651091..427651323
Molecular Weight (calculated)
7791.8 Da
IEP (calculated)
9.254
GRAVY (calculated)
0.874
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MNPLTIAASR LVVVLASIGP GVGQGTAAGQ AEAIARQPKA EDKIRGTLLL SLAFMEALTI YGLVVALALL FANPFV
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.