Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G220200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 96.3 | 96.3 |
| CAA33991 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 95.06 | 95.06 |
| HORVU0Hr1G037590.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 95.06 | 95.06 |
| TraesCS5B01G052700.1 | Wheat | plastid | 95.06 | 95.06 |
| TraesCS7B01G395900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.06 | 95.06 |
| TraesCS1B01G404900.1 | Wheat | endoplasmic reticulum, vacuole | 93.83 | 93.83 |
| TraesCS7B01G338100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 92.59 | 92.59 |
| TraesCSU01G174300.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 92.59 | 92.59 |
| TraesCS7A01G363200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 90.12 | 90.12 |
| Solyc10g044550.1.1 | Tomato | endoplasmic reticulum, extracellular | 83.95 | 83.95 |
| TraesCS1B01G239600.1 | Wheat | golgi, plasma membrane | 76.54 | 81.58 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_DDCD_BS | InterPro:ATP_synth_F0_csu_sf | InterPro:ATP_synth_csu_bac/chlpt |
| InterPro:ATPase_proteolipid_c-like_dom | InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0033177 |
| GO:GO:0045263 | InterPro:IPR038662 | HAMAP:MF_01396 | PFAM:PF00137 | PRINTS:PR00124 | ScanProsite:PS00605 |
| PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 | SUPFAM:SSF81333 | SignalP:SignalP-TM | TIGRFAMs:TIGR01260 | TMHMM:TMhelix |
| EnsemblPlantsGene:TraesCS6B01G256800 | EnsemblPlants:TraesCS6B01G256800.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:461332335..461332580
Molecular Weight (calculated)
8101.2 Da
IEP (calculated)
4.628
GRAVY (calculated)
1.157
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MNPLIVVASV IAAGLAVGLA SIGPGVGQGT IAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFVNPF V
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.