CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
golgi 5
plasma membrane 6
endoplasmic reticulum 6
vacuole 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0151200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00140.1	Os01t0151200-01	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G196700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU0Hr1G034610.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU0Hr1G037590.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
HORVU6Hr1G049160.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCS5B01G052700.1	Wheat	plastid	100.0	100.0
AGP50750	Barley	plastid	100.0	100.0
TraesCS1D01G180800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	100.0	100.0
TraesCSU01G271100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	98.77	98.77
TraesCSU01G269000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	98.77	98.77
TraesCS5D01G011200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	98.77	98.77
ATCG00140.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	97.53	97.53
TraesCS5D01G459200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	97.53	97.53
TraesCS1D01G070600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	97.53	97.53
TraesCS1B01G404900.1	Wheat	endoplasmic reticulum, vacuole	97.53	97.53
TraesCS7B01G395900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	97.53	97.53
TraesCSU01G174300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	97.53	97.53
TraesCS5D01G220200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	96.3	96.3
TraesCS6B01G256800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	95.06	95.06
TraesCS6D01G021800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	93.83	93.83
TraesCS4D01G042700.1	Wheat	vacuole	93.83	93.83
TraesCS7B01G338100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	92.59	92.59
TraesCS7A01G363200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	91.36	91.36
Solyc10g044550.1.1	Tomato	endoplasmic reticulum, extracellular	87.65	87.65
KRH55079	Soybean	cytosol, plasma membrane, plastid	66.67	84.38
CDY21188	Canola	endoplasmic reticulum, extracellular, vacuole	97.53	81.44
KRH57995	Soybean	endoplasmic reticulum, extracellular	74.07	72.29
VIT_10s0003g04310.t01	Wine grape	cytosol	53.09	69.35
CDY40490	Canola	plastid	92.59	60.98
EER95386	Sorghum	endoplasmic reticulum, plasma membrane	74.07	60.61

Protein Annotations

MapMan:1.1.9.1.4	Gene3D:1.20.20.10	EntrezGene:3131392	ProteinID:AAM08595.1	ProteinID:AAM12342.1	ProteinID:AAM12484.1
ProteinID:AAM48260.1	ProteinID:AAS46116.1	ProteinID:ADD62829.1	ProteinID:AJC99308.1	ProteinID:AJC99397.1	InterPro:ATP_synth_F0_csu
InterPro:ATP_synth_F0_csu_DDCD_BS	InterPro:ATP_synth_F0_csu_sf	InterPro:ATP_synth_csu_bac/chlpt	InterPro:ATPase_proteolipid_c-like_dom	EnsemblPlants:CAA33991	EnsemblPlantsGene:CAA33991
ProteinID:CAA33991	ProteinID:CAA33991.1	UniProt:E9KIN6	InterPro:F/V-ATP_Csub_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015991	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0033177	GO:GO:0045263	GO:GO:0046933	InterPro:IPR038662	HAMAP:MF_01396
RefSeq:NP_039378.1	UniProt:P0C301	PFAM:PF00137	PRINTS:PR00124	ScanProsite:PS00605	PANTHER:PTHR10031
PANTHER:PTHR10031:SF6	Reactome:R-HSA-163210	Reactome:R-HSA-8949613	SUPFAM:SSF81333	TIGRFAMs:TIGR01260	TMHMM:TMhelix
UniParc:UPI00000010B1	SEG:seg	:	:	:	:

Description

atpHATPase III subunit

Coordinates

chrPt:+:32039..32284

Molecular Weight (calculated)

7975.0 Da

IEP (calculated)

4.628

GRAVY (calculated)

1.035

Length

81 amino acids

Sequence
(BLAST)

1: MNPLIAAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V

Best Arabidopsis Sequence Match ( ATCG00140.1 )
(BLAST)

1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V

Arabidopsis Description

ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [plasma membrane,endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.