Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G075700.1 | |
| TraesCS3B01G089800.1 | |
| TraesCS3D01G075800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| ATCG00140.1 | TraesCS3A01G075700.1 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | TraesCS3B01G089800.1 | AT2G28800.1 | 15988575 |
| ATCG00140.1 | TraesCS3D01G075800.1 | AT2G28800.1 | 15988575 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CAA33991 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 97.53 | 97.53 |
| TraesCS5D01G196700.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 97.53 | 97.53 |
| HORVU0Hr1G037590.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 97.53 | 97.53 |
| TraesCS5D01G011200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.3 | 96.3 |
| TraesCSU01G271100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 96.3 | 96.3 |
| TraesCSU01G269000.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 96.3 | 96.3 |
| TraesCS1B01G404900.1 | Wheat | endoplasmic reticulum, vacuole | 96.3 | 96.3 |
| ATCG00140.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 95.06 | 95.06 |
| TraesCS7B01G395900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.06 | 95.06 |
| TraesCS5D01G220200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 93.83 | 93.83 |
| TraesCS4D01G042700.1 | Wheat | vacuole | 92.59 | 92.59 |
| TraesCS6B01G256800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 92.59 | 92.59 |
| TraesCS6D01G021800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 91.36 | 91.36 |
| TraesCS7A01G363200.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 90.12 | 90.12 |
| TraesCS7B01G338100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 90.12 | 90.12 |
| Solyc10g044550.1.1 | Tomato | endoplasmic reticulum, extracellular | 86.42 | 86.42 |
| KRH55079 | Soybean | cytosol, plasma membrane, plastid | 65.43 | 82.81 |
| CDY21188 | Canola | endoplasmic reticulum, extracellular, vacuole | 95.06 | 79.38 |
| KRH57995 | Soybean | endoplasmic reticulum, extracellular | 72.84 | 71.08 |
| VIT_10s0003g04310.t01 | Wine grape | cytosol | 50.62 | 66.13 |
| EER95386 | Sorghum | endoplasmic reticulum, plasma membrane | 72.84 | 59.6 |
| CDY40490 | Canola | plastid | 90.12 | 59.35 |
Protein Annotations
| MapMan:1.1.9.1.4 | Gene3D:1.20.20.10 | InterPro:ATP_synth_F0_csu | InterPro:ATP_synth_F0_csu_sf | InterPro:ATP_synth_csu_bac/chlpt | InterPro:ATPase_proteolipid_c-like_dom |
| InterPro:F/V-ATP_Csub_sf | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006139 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015078 | GO:GO:0015986 | GO:GO:0015991 | GO:GO:0016020 | GO:GO:0033177 | GO:GO:0045263 |
| InterPro:IPR038662 | HAMAP:MF_01396 | PFAM:PF00137 | PRINTS:PR00124 | PANTHER:PTHR10031 | PANTHER:PTHR10031:SF6 |
| SUPFAM:SSF81333 | TIGRFAMs:TIGR01260 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCSU01G174300 | EnsemblPlants:TraesCSU01G174300.1 | SEG:seg |
Description
No Description!
Coordinates
chrUn:-:261568790..261569035
Molecular Weight (calculated)
8014.0 Da
IEP (calculated)
5.638
GRAVY (calculated)
1.007
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MNPLIAAASV IAAGLAVGLA SIGPGVGQGT ATGQAVEGIA RHPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V
Arabidopsis Description
ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.