Factsheet for VIT_10s0003g04310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g04460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATCG00140.1	VIT_06s0004g04460.t01	AT2G28800.1	15988575

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH55079	Soybean	cytosol, plasma membrane, plastid	59.68	57.81
TraesCS1B01G239600.1	Wheat	golgi, plasma membrane	66.13	53.95
ATCG00140.1	Thale cress	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
CAA33991	Rice	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
AGP50750	Barley	plastid	69.35	53.09
TraesCSU01G269000.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
HORVU0Hr1G034610.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
HORVU0Hr1G037590.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
HORVU6Hr1G049160.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
TraesCS5D01G220200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	69.35	53.09
TraesCS5D01G196700.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
TraesCS1D01G180800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
TraesCS5D01G011200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	69.35	53.09
TraesCSU01G271100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	67.74	51.85
TraesCS6D01G021800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	67.74	51.85
TraesCS1D01G070600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	67.74	51.85
TraesCS4D01G042700.1	Wheat	vacuole	66.13	50.62
TraesCS5D01G459200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	66.13	50.62
TraesCSU01G174300.1	Wheat	endoplasmic reticulum, extracellular, vacuole	66.13	50.62
TraesCS7A01G363200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	64.52	49.38
KRH57995	Soybean	endoplasmic reticulum, extracellular	62.9	46.99
EER95386	Sorghum	endoplasmic reticulum, plasma membrane	59.68	37.37
CDY40490	Canola	plastid	66.13	33.33
Solyc07g021260.1.1	Tomato	cytosol	35.48	32.35

Protein Annotations

Gene3D:1.20.20.10	MapMan:35.2	InterPro:ATP_synth_F0_csu	InterPro:ATP_synth_F0_csu_sf	InterPro:ATPase_proteolipid_c-like_dom	ProteinID:CBI30971
ProteinID:CBI30971.3	UniProt:D7TKE9	InterPro:F/V-ATP_Csub_sf	EMBL:FN595992	GO:GO:0003674	GO:GO:0003824
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0008289	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009987	GO:GO:0015078	GO:GO:0015986	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0033177	GO:GO:0045263	GO:GO:0046933	InterPro:IPR038662
PFAM:PF00137	PRINTS:PR00124	PANTHER:PTHR10031	PANTHER:PTHR10031:SF6	SUPFAM:SSF81333	TMHMM:TMhelix
UniParc:UPI0001BE3594	ArrayExpress:VIT_10s0003g04310	EnsemblPlantsGene:VIT_10s0003g04310	EnsemblPlants:VIT_10s0003g04310.t01	:	:

Description

No Description!

Coordinates

chr10:+:7407352..7407906

Molecular Weight (calculated)

6861.7 Da

IEP (calculated)

8.220

GRAVY (calculated)

0.802

Length

62 amino acids

Sequence
(BLAST)

1: MNPLDFCRFC TVASQVVEGT PRQPEVEGKI RGTLLLSLAF MKALTIYGLV VSLTLLFVNL FV

Best Arabidopsis Sequence Match ( ATCG00140.1 )
(BLAST)

1: MNPLVSAASV IAAGLAVGLA SIGPGVGQGT AAGQAVEGIA RQPEAEGKIR GTLLLSLAFM EALTIYGLVV ALALLFANPF V

Arabidopsis Description

ATPHATP synthase subunit c, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4S3]
SUBAcon: [endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.